RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 PCDHB11Q9Y5F2 797 aa6.75□□□□□ -1.33
SKA3-207ENST00000536239 CENPCQ03188 943 aa6.74□□□□□ -1.33
SKA3-207ENST00000536239 UBAP2LQ14157 1087 aaKnown RBP6.74□□□□□ -1.33
SKA3-207ENST00000536239 TMEM259Q4ZIN3 620 aa6.74□□□□□ -1.33
SKA3-207ENST00000536239 GOLGA6L1Q8N7Z2 621 aa6.74□□□□□ -1.33
SKA3-207ENST00000536239 CNKSR1Q969H4 720 aa6.74□□□□□ -1.33
SKA3-207ENST00000536239 GJD4Q96KN9 370 aaPredicted RBP6.74□□□□□ -1.33
SKA3-207ENST00000536239 ESYT1Q9BSJ8 1104 aa6.74□□□□□ -1.33
SKA3-207ENST00000536239 ESF1Q9H501 851 aaKnown RBP6.74□□□□□ -1.33
SKA3-207ENST00000536239 RAB6BQ9NRW1 208 aa6.74□□□□□ -1.33
SKA3-207ENST00000536239 A0A1B0GTH6 734 aa6.73□□□□□ -1.33
SKA3-207ENST00000536239 GNRH1P01148 92 aa6.73□□□□□ -1.33
SKA3-207ENST00000536239 HOXB4P17483 251 aaPredicted RBP6.73□□□□□ -1.33
SKA3-207ENST00000536239 PHKA2P46019 1235 aa6.73□□□□□ -1.33
SKA3-207ENST00000536239 LBRQ14739 615 aaKnown RBP6.73□□□□□ -1.33
SKA3-207ENST00000536239 LINC00114Q6XXX2 140 aa6.73□□□□□ -1.33
SKA3-207ENST00000536239 IL2RAP01589 272 aa6.72□□□□□ -1.33
SKA3-207ENST00000536239 NR1H3Q13133 447 aa6.72□□□□□ -1.33
SKA3-207ENST00000536239 GRIN2CQ14957 1233 aa6.72□□□□□ -1.33
SKA3-207ENST00000536239 ZNF592Q92610 1267 aa6.72□□□□□ -1.33
SKA3-207ENST00000536239 ZSCAN10Q96SZ4 725 aaPredicted RBP6.72□□□□□ -1.33
SKA3-207ENST00000536239 SUV39H2Q9H5I1 410 aa6.72□□□□□ -1.33
SKA3-207ENST00000536239 C2CD2LO14523 706 aa6.71□□□□□ -1.34
SKA3-207ENST00000536239 ATXN7L1Q9ULK2 861 aaPredicted RBP6.71□□□□□ -1.34
SKA3-207ENST00000536239 HRH3Q9Y5N1 445 aa6.71□□□□□ -1.34
SKA3-207ENST00000536239 C1QTNF9BB2RNN3 333 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 PIK3R2O00459 728 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 CSB-PGBD3P0DP91 1061 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 BMP4P12644 408 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 AMPD1P23109 780 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 PGBD3Q8N328 593 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 XAGE2Q96GT9 111 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 RUBCNLQ9H714 662 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 GOPCQ9HD26 462 aa6.7□□□□□ -1.34
SKA3-207ENST00000536239 ZNF330Q9Y3S2 320 aaPredicted RBP6.7□□□□□ -1.34
SKA3-207ENST00000536239 GNB5O14775 395 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 MSX1P28360 303 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 GTF2E1P29083 439 aaPredicted RBP6.69□□□□□ -1.34
SKA3-207ENST00000536239 C4orf17Q53FE4 359 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 GNASQ5JWF2 1037 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 TMEM214Q6NUQ4 689 aaKnown RBP6.69□□□□□ -1.34
SKA3-207ENST00000536239 SLCO4C1Q6ZQN7 724 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 BTBD6Q96KE9 485 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 PCMTD1Q96MG8 357 aaPredicted RBP6.69□□□□□ -1.34
SKA3-207ENST00000536239 FHDC1Q9C0D6 1143 aaPredicted RBP6.69□□□□□ -1.34
SKA3-207ENST00000536239 NDFIP2Q9NV92 336 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 GGA1Q9UJY5 639 aa6.69□□□□□ -1.34
SKA3-207ENST00000536239 BNIP3LO60238 219 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 FGFR3P22607 806 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 CTBSQ01459 385 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 EFHC2Q5JST6 749 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 CD163Q86VB7 1156 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 ABHD17AQ96GS6 310 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 PSMG3-AS1Q96PY0 264 aa6.68□□□□□ -1.34
SKA3-207ENST00000536239 MYCP01106 439 aaPredicted RBP6.67□□□□□ -1.34
SKA3-207ENST00000536239 EPXP11678 715 aa6.67□□□□□ -1.34
SKA3-207ENST00000536239 CDCA7Q9BWT1 371 aaPredicted RBP6.67□□□□□ -1.34
SKA3-207ENST00000536239 DGKGP49619 791 aa6.66□□□□□ -1.34
SKA3-207ENST00000536239 CRISPLD1Q9H336 500 aa6.66□□□□□ -1.34
SKA3-207ENST00000536239 ARAFP10398 606 aa6.65□□□□□ -1.34
SKA3-207ENST00000536239 CHRNA4P43681 627 aa6.65□□□□□ -1.34
SKA3-207ENST00000536239 ESCO1Q5FWF5 840 aa6.65□□□□□ -1.34
SKA3-207ENST00000536239 RNF135Q8IUD6 432 aa6.65□□□□□ -1.34
SKA3-207ENST00000536239 RHBDD1Q8TEB9 315 aa6.65□□□□□ -1.34
SKA3-207ENST00000536239 CCDC85AQ96PX6 553 aaPredicted RBP6.65□□□□□ -1.34
SKA3-207ENST00000536239 NOP53Q9NZM5 478 aaKnown RBP6.65□□□□□ -1.34
SKA3-207ENST00000536239 CEP126Q9P2H0 1117 aa6.65□□□□□ -1.34
SKA3-207ENST00000536239 NEURL1BA8MQ27 555 aa6.64□□□□□ -1.35
SKA3-207ENST00000536239 GPR37L1O60883 481 aa6.64□□□□□ -1.35
SKA3-207ENST00000536239 ITGB7P26010 798 aa6.64□□□□□ -1.35
SKA3-207ENST00000536239 PPARGC1BQ86YN6 1023 aaKnown RBP6.64□□□□□ -1.35
SKA3-207ENST00000536239 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.63□□□□□ -1.35
SKA3-207ENST00000536239 FIGNL1Q6PIW4 674 aa6.63□□□□□ -1.35
SKA3-207ENST00000536239 KRTAP9-2Q9BYQ4 174 aa6.63□□□□□ -1.35
SKA3-207ENST00000536239 DOC2BQ14184 412 aa6.62□□□□□ -1.35
SKA3-207ENST00000536239 CHSY3Q70JA7 882 aa6.62□□□□□ -1.35
SKA3-207ENST00000536239 ZCCHC2Q9C0B9 1178 aaKnown RBP6.62□□□□□ -1.35
SKA3-207ENST00000536239 SEMA6BQ9H3T3 888 aa6.62□□□□□ -1.35
SKA3-207ENST00000536239 ETNK1Q9HBU6 452 aa6.62□□□□□ -1.35
SKA3-207ENST00000536239 DNAAF2Q9NVR5 837 aaKnown RBP6.62□□□□□ -1.35
SKA3-207ENST00000536239 PCDHGC4Q9Y5F7 938 aa6.62□□□□□ -1.35
SKA3-207ENST00000536239 SOCS7O14512 581 aa6.61□□□□□ -1.35
SKA3-207ENST00000536239 TBC1D9Q6ZT07 1266 aa6.61□□□□□ -1.35
SKA3-207ENST00000536239 NDUFB9Q9Y6M9 179 aa6.61□□□□□ -1.35
SKA3-207ENST00000536239 STAU1O95793 577 aaKnown RBP6.6□□□□□ -1.35
SKA3-207ENST00000536239 USP4Q13107 963 aa6.6□□□□□ -1.35
SKA3-207ENST00000536239 TLR1Q15399 786 aa6.6□□□□□ -1.35
SKA3-207ENST00000536239 TSGA10IPQ3SY00 556 aa6.6□□□□□ -1.35
SKA3-207ENST00000536239 NLRP8Q86W28 1048 aa6.6□□□□□ -1.35
SKA3-207ENST00000536239 BANK1Q8NDB2 785 aa6.6□□□□□ -1.35
SKA3-207ENST00000536239 KLF15Q9UIH9 416 aa6.6□□□□□ -1.35
SKA3-207ENST00000536239 KRTAP9-6A0A140TA67 174 aa6.59□□□□□ -1.35
SKA3-207ENST00000536239 ATXN7O15265 892 aaPredicted RBP6.59□□□□□ -1.35
SKA3-207ENST00000536239 ADH6P28332 368 aa6.59□□□□□ -1.35
SKA3-207ENST00000536239 PLA2G4AP47712 749 aa6.59□□□□□ -1.35
SKA3-207ENST00000536239 FAM182BQ5T319 152 aa6.59□□□□□ -1.35
SKA3-207ENST00000536239 C1orf216Q8TAB5 229 aa6.59□□□□□ -1.35
SKA3-207ENST00000536239 ATP4AP20648 1035 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 GATA4P43694 442 aa6.58□□□□□ -1.36
SKA3-207ENST00000536239 TNP2Q05952 138 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms