RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 GMPRP36959 345 aa8.52□□□□□ -1.05
CD44-217ENST00000525348 TLR1Q15399 786 aa8.52□□□□□ -1.05
CD44-217ENST00000525348 ZSCAN10Q96SZ4 725 aaPredicted RBP8.52□□□□□ -1.05
CD44-217ENST00000525348 SERTAD1Q9UHV2 236 aa8.52□□□□□ -1.05
CD44-217ENST00000525348 ITGA6P23229 1130 aa8.51□□□□□ -1.05
CD44-217ENST00000525348 GPR161Q8N6U8 529 aaKnown RBP8.51□□□□□ -1.05
CD44-217ENST00000525348 MKRN1Q9UHC7 482 aaKnown RBP8.51□□□□□ -1.05
CD44-217ENST00000525348 USP3Q9Y6I4 520 aa8.51□□□□□ -1.05
CD44-217ENST00000525348 DKK1O94907 266 aa8.5□□□□□ -1.05
CD44-217ENST00000525348 C4orf17Q53FE4 359 aa8.5□□□□□ -1.05
CD44-217ENST00000525348 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
CD44-217ENST00000525348 IRF7Q92985 503 aa8.5□□□□□ -1.05
CD44-217ENST00000525348 ZNF358Q9NW07 568 aa8.5□□□□□ -1.05
CD44-217ENST00000525348 PHKA2P46019 1235 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 SMTNP53814 917 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 PSME1Q06323 249 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 CFAP70Q5T0N1 1121 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 TAS1R3Q7RTX0 852 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 PPARGC1BQ86YN6 1023 aaKnown RBP8.49□□□□□ -1.05
CD44-217ENST00000525348 ZNF295-AS1Q8N0V1 137 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 OGFOD1Q8N543 542 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 SLC4A9Q96Q91 983 aa8.49□□□□□ -1.05
CD44-217ENST00000525348 WIPF1O43516 503 aa8.48□□□□□ -1.05
CD44-217ENST00000525348 KANK4Q5T7N3 995 aaPredicted RBP8.48□□□□□ -1.05
CD44-217ENST00000525348 TRIM50Q86XT4 487 aa8.48□□□□□ -1.05
CD44-217ENST00000525348 TPCN2Q8NHX9 752 aa8.48□□□□□ -1.05
CD44-217ENST00000525348 IQSEC3Q9UPP2 1182 aaPredicted RBP8.48□□□□□ -1.05
CD44-217ENST00000525348 LMOD1P29536 600 aaPredicted RBP8.47□□□□□ -1.05
CD44-217ENST00000525348 MTFR1Q15390 333 aa8.47□□□□□ -1.05
CD44-217ENST00000525348 WDR44Q5JSH3 913 aa8.47□□□□□ -1.05
CD44-217ENST00000525348 TMEM214Q6NUQ4 689 aaKnown RBP8.47□□□□□ -1.05
CD44-217ENST00000525348 VWA5B2Q8N398 1253 aa8.47□□□□□ -1.05
CD44-217ENST00000525348 NANOS1Q8WY41 292 aaKnown RBP8.47□□□□□ -1.05
CD44-217ENST00000525348 ZNF594Q96JF6 807 aaPredicted RBP8.47□□□□□ -1.05
CD44-217ENST00000525348 TIMMDC1Q9NPL8 285 aa8.47□□□□□ -1.05
CD44-217ENST00000525348 DNAAF2Q9NVR5 837 aaKnown RBP8.47□□□□□ -1.05
CD44-217ENST00000525348 DYRK1BQ9Y463 629 aa8.47□□□□□ -1.05
CD44-217ENST00000525348 A6NJY4 79 aa8.46□□□□□ -1.06
CD44-217ENST00000525348 ARID3CA6NKF2 412 aa8.46□□□□□ -1.06
CD44-217ENST00000525348 THBS1P07996 1170 aa8.46□□□□□ -1.06
CD44-217ENST00000525348 EPHA4P54764 986 aa8.46□□□□□ -1.06
CD44-217ENST00000525348 CCDC102BQ68D86 513 aa8.46□□□□□ -1.06
CD44-217ENST00000525348 CDC14CA4D256 554 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 ATP1A2P50993 1020 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 KRT76Q01546 638 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 CRTC2Q53ET0 693 aaPredicted RBP8.45□□□□□ -1.06
CD44-217ENST00000525348 GNASQ5JWF2 1037 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 SIX5Q8N196 739 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 LARGE2Q8N3Y3 721 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 RHBDD1Q8TEB9 315 aa8.45□□□□□ -1.06
CD44-217ENST00000525348 GAS2L1Q99501 681 aaPredicted RBP8.45□□□□□ -1.06
CD44-217ENST00000525348 SFI1A8K8P3 1242 aa8.44□□□□□ -1.06
CD44-217ENST00000525348 RASA1P20936 1047 aa8.44□□□□□ -1.06
CD44-217ENST00000525348 PLA2G4AP47712 749 aa8.44□□□□□ -1.06
CD44-217ENST00000525348 DBN1Q16643 649 aa8.44□□□□□ -1.06
CD44-217ENST00000525348 TNS4Q8IZW8 715 aa8.44□□□□□ -1.06
CD44-217ENST00000525348 ZNF837Q96EG3 531 aaPredicted RBP8.44□□□□□ -1.06
CD44-217ENST00000525348 CDK2AP1O14519 115 aa8.43□□□□□ -1.06
CD44-217ENST00000525348 LORP23490 312 aaPredicted RBP8.43□□□□□ -1.06
CD44-217ENST00000525348 FOXK2Q01167 660 aa8.43□□□□□ -1.06
CD44-217ENST00000525348 TBCELQ5QJ74 424 aa8.43□□□□□ -1.06
CD44-217ENST00000525348 RIPOR1Q6ZS17 1223 aa8.43□□□□□ -1.06
CD44-217ENST00000525348 C14orf37Q86TY3 774 aa8.43□□□□□ -1.06
CD44-217ENST00000525348 GPAMQ9HCL2 828 aa8.43□□□□□ -1.06
CD44-217ENST00000525348 SCHIP1Q9P0W5 487 aaPredicted RBP8.43□□□□□ -1.06
CD44-217ENST00000525348 BACH1O14867 736 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 F11P03951 625 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 RFX1P22670 979 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 PTK7Q13308 1070 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 CDCA8Q53HL2 280 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 RNFT1Q5M7Z0 435 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 SV2AQ7L0J3 742 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 TRIM22Q8IYM9 498 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 ZDHHC1Q8WTX9 485 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 C1orf115Q9H7X2 142 aa8.42□□□□□ -1.06
CD44-217ENST00000525348 A0A1B0GTH6 734 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L15C9J2P7 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L10C9JJH3 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L13C9JLJ4 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L12C9JPN9 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L11C9JVI0 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L21D6R901 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L18D6R9N7 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L22D6RA61 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L17D6RBQ6 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L19D6RCP7 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L20D6RJB6 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 MSX1P28360 303 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 GTF2E1P29083 439 aaPredicted RBP8.41□□□□□ -1.06
CD44-217ENST00000525348 USP17L24Q0WX57 530 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 TSEN2Q8NCE0 465 aaKnown RBP8.41□□□□□ -1.06
CD44-217ENST00000525348 COL25A1Q9BXS0 654 aaPredicted RBP8.41□□□□□ -1.06
CD44-217ENST00000525348 NIFKQ9BYG3 293 aaKnown RBP8.41□□□□□ -1.06
CD44-217ENST00000525348 PARP3Q9Y6F1 533 aa8.41□□□□□ -1.06
CD44-217ENST00000525348 ATP4AP20648 1035 aa8.4□□□□□ -1.06
CD44-217ENST00000525348 GAS6Q14393 721 aa8.4□□□□□ -1.06
CD44-217ENST00000525348 SLC9A9Q8IVB4 645 aa8.4□□□□□ -1.06
CD44-217ENST00000525348 ARXQ96QS3 562 aa8.4□□□□□ -1.06
CD44-217ENST00000525348 RUBCNLQ9H714 662 aa8.4□□□□□ -1.06
CD44-217ENST00000525348 VRTNQ9H8Y1 702 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms