RNA–Protein interactions for RNA: ENST00000522466.1

PDGFRB-210, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 296 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-210ENST00000522466 PRELPP51888 382 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 SIK1P57059 783 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 HSP90AB2PQ58FF8 381 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 GGNBP2Q9H3C7 697 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 RRAGCQ9HB90 399 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 CGNL1Q0VF96 1302 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 KCPQ6ZWJ8 1503 aa11.31□□□□□ -0.6
PDGFRB-210ENST00000522466 ATP6V1AP38606 617 aa11.31□□□□□ -0.6
PDGFRB-210ENST00000522466 JMYQ8N9B5 988 aa11.31□□□□□ -0.6
PDGFRB-210ENST00000522466 ASAP1Q9ULH1 1129 aa11.31□□□□□ -0.6
PDGFRB-210ENST00000522466 SMG6Q86US8 1419 aaKnown RBP11.31□□□□□ -0.6
PDGFRB-210ENST00000522466 NSD3Q9BZ95 1437 aa11.31□□□□□ -0.6
PDGFRB-210ENST00000522466 PKD1L3Q7Z443 1732 aa11.3□□□□□ -0.6
PDGFRB-210ENST00000522466 HMGB2P26583 209 aaKnown RBP11.3□□□□□ -0.6
PDGFRB-210ENST00000522466 TGFB2P61812 414 aa11.3□□□□□ -0.6
PDGFRB-210ENST00000522466 POTEHQ6S545 545 aa11.3□□□□□ -0.6
PDGFRB-210ENST00000522466 BRCA1P38398 1863 aaKnown RBP11.29□□□□□ -0.6
PDGFRB-210ENST00000522466 RTL1A6NKG5 1358 aa11.29□□□□□ -0.6
PDGFRB-210ENST00000522466 RNF181Q9P0P0 153 aa11.29□□□□□ -0.6
PDGFRB-210ENST00000522466 C10orf71Q711Q0 1435 aa11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 HSPA1AP0DMV8 641 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 HSPA1BP0DMV9 641 aaKnown RBP11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 TMF1P82094 1093 aa11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 FSTL1Q12841 308 aa11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 CCDC87Q9NVE4 849 aa11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 TMOD3Q9NYL9 352 aa11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 U3KPZ7 1027 aaPredicted RBP11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 ARFGEF1Q9Y6D6 1849 aa11.28□□□□□ -0.6
PDGFRB-210ENST00000522466 C4AP0C0L4 1744 aa11.27□□□□□ -0.61
PDGFRB-210ENST00000522466 FYB1O15117 783 aa11.27□□□□□ -0.61
PDGFRB-210ENST00000522466 TRAPPC3LQ5T215 181 aa11.27□□□□□ -0.61
PDGFRB-210ENST00000522466 RBM42Q9BTD8 480 aaKnown RBP11.27□□□□□ -0.61
PDGFRB-210ENST00000522466 PARP3Q9Y6F1 533 aa11.27□□□□□ -0.61
PDGFRB-210ENST00000522466 SBF1O95248 1867 aa11.27□□□□□ -0.61
PDGFRB-210ENST00000522466 NLGN1Q8N2Q7 840 aa11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 ARHGEF1Q92888 912 aaKnown RBP11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 RTCBQ9Y3I0 505 aaKnown RBP11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 EMILIN1Q9Y6C2 1016 aa11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 KDM2BQ8NHM5 1336 aa11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 INSRP06213 1382 aa11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 PLEKHG2Q9H7P9 1386 aa11.26□□□□□ -0.61
PDGFRB-210ENST00000522466 PPM1GO15355 546 aaPredicted RBP11.25□□□□□ -0.61
PDGFRB-210ENST00000522466 KCNA3P22001 575 aa11.25□□□□□ -0.61
PDGFRB-210ENST00000522466 SPINK5Q9NQ38 1064 aaPredicted RBP11.25□□□□□ -0.61
PDGFRB-210ENST00000522466 ATG3Q9NT62 314 aa11.25□□□□□ -0.61
PDGFRB-210ENST00000522466 SPG7Q9UQ90 795 aa11.25□□□□□ -0.61
PDGFRB-210ENST00000522466 KIF20BQ96Q89 1820 aa11.25□□□□□ -0.61
PDGFRB-210ENST00000522466 TNRC6CQ9HCJ0 1690 aaKnown RBP11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 ST20-MTHFSA0A0A6YYL1 179 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 GYS1P13807 737 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 CHRNA5P30532 468 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 DSG3P32926 999 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 RFC4P35249 363 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 RASSF7Q02833 373 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 NKX1-1Q15270 411 aaPredicted RBP11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 DALRD3Q5D0E6 543 aaKnown RBP11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 SMC1BQ8NDV3 1235 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 SLC4A9Q96Q91 983 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 PIM2Q9P1W9 311 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 SRP68Q9UHB9 627 aaKnown RBP11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 FLT4P35916 1363 aa11.24□□□□□ -0.61
PDGFRB-210ENST00000522466 CCDC88AQ3V6T2 1871 aa11.23□□□□□ -0.61
PDGFRB-210ENST00000522466 MYH14Q7Z406 1995 aaKnown RBP11.23□□□□□ -0.61
PDGFRB-210ENST00000522466 DCAF5Q96JK2 942 aa11.23□□□□□ -0.61
PDGFRB-210ENST00000522466 PUS7Q96PZ0 661 aaKnown RBP11.23□□□□□ -0.61
PDGFRB-210ENST00000522466 TESK2Q96S53 571 aa11.23□□□□□ -0.61
PDGFRB-210ENST00000522466 PHKG2P15735 406 aa11.22□□□□□ -0.61
PDGFRB-210ENST00000522466 IFNL2Q8IZJ0 200 aa11.21□□□□□ -0.61
PDGFRB-210ENST00000522466 PCNTO95613 3336 aa11.21□□□□□ -0.62
PDGFRB-210ENST00000522466 COL5A3P25940 1745 aaPredicted RBP11.21□□□□□ -0.62
PDGFRB-210ENST00000522466 KDRP35968 1356 aa11.2□□□□□ -0.62
PDGFRB-210ENST00000522466 RPS6KA4O75676 772 aa11.2□□□□□ -0.62
PDGFRB-210ENST00000522466 DDR1Q08345 913 aa11.2□□□□□ -0.62
PDGFRB-210ENST00000522466 FKBP8Q14318 412 aa11.2□□□□□ -0.62
PDGFRB-210ENST00000522466 EYA1Q99502 592 aa11.2□□□□□ -0.62
PDGFRB-210ENST00000522466 CNTNAP4Q9C0A0 1308 aa11.18□□□□□ -0.62
PDGFRB-210ENST00000522466 PTCD1O75127 700 aaKnown RBP11.18□□□□□ -0.62
PDGFRB-210ENST00000522466 RC3H1Q5TC82 1133 aaKnown RBP11.18□□□□□ -0.62
PDGFRB-210ENST00000522466 MKRN1Q9UHC7 482 aaKnown RBP11.18□□□□□ -0.62
PDGFRB-210ENST00000522466 VEGFAP15692 232 aaPredicted RBP11.17□□□□□ -0.62
PDGFRB-210ENST00000522466 TIAM2Q8IVF5 1701 aa11.17□□□□□ -0.62
PDGFRB-210ENST00000522466 NCAPD2Q15021 1401 aa11.17□□□□□ -0.62
PDGFRB-210ENST00000522466 GLTPD2A6NH11 291 aa11.16□□□□□ -0.62
PDGFRB-210ENST00000522466 CRKLP46109 303 aaKnown RBP11.16□□□□□ -0.62
PDGFRB-210ENST00000522466 AFDNP55196 1824 aaKnown RBP11.16□□□□□ -0.62
PDGFRB-210ENST00000522466 KIF24Q5T7B8 1368 aa11.16□□□□□ -0.62
PDGFRB-210ENST00000522466 TONSLQ96HA7 1378 aa11.16□□□□□ -0.62
PDGFRB-210ENST00000522466 USP42Q9H9J4 1324 aaKnown RBP11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 POLRMTO00411 1230 aaKnown RBP11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 LMNB1P20700 586 aa11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 CABP4P57796 275 aa11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 CARD14Q9BXL6 1004 aa11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 ZNF219Q9P2Y4 722 aaPredicted RBP11.15□□□□□ -0.62
PDGFRB-210ENST00000522466 WASHC2AQ641Q2 1341 aa11.14□□□□□ -0.63
PDGFRB-210ENST00000522466 POTECB2RU33 542 aa11.14□□□□□ -0.63
PDGFRB-210ENST00000522466 ERVV-2B6SEH9 535 aa11.14□□□□□ -0.63
PDGFRB-210ENST00000522466 FOXN1O15353 648 aa11.14□□□□□ -0.63
PDGFRB-210ENST00000522466 TNNT2P45379 298 aaPredicted RBP11.14□□□□□ -0.63
PDGFRB-210ENST00000522466 USPL1Q5W0Q7 1092 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms