RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 VIMP08670 466 aaKnown RBP10.4□□□□□ -0.74
VCAN-208ENST00000512590 TNNI2P48788 182 aa10.4□□□□□ -0.74
VCAN-208ENST00000512590 SPC25Q9HBM1 224 aa10.4□□□□□ -0.74
VCAN-208ENST00000512590 CEP135Q66GS9 1140 aa10.4□□□□□ -0.75
VCAN-208ENST00000512590 VPS36Q86VN1 386 aa10.4□□□□□ -0.75
VCAN-208ENST00000512590 NUTM1Q86Y26 1132 aa10.4□□□□□ -0.75
VCAN-208ENST00000512590 CEP83Q9Y592 693 aa10.4□□□□□ -0.75
VCAN-208ENST00000512590 M0QZ92 97 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 USP8P40818 1118 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 EIF6P56537 245 aaKnown RBP10.39□□□□□ -0.75
VCAN-208ENST00000512590 PROCA1Q8NCQ7 364 aaPredicted RBP10.39□□□□□ -0.75
VCAN-208ENST00000512590 WASF1Q92558 559 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 RSPH6AQ9H0K4 717 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 IRAK4Q9NWZ3 460 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 LDHCP07864 332 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 EIF5P55010 431 aaKnown RBP10.39□□□□□ -0.75
VCAN-208ENST00000512590 UBE4AQ14139 1066 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 HS1BP3Q53T59 392 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 FCHSD2O94868 740 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 HSP90AB3PQ58FF7 597 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 ADRA2BP18089 450 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 GSE1Q14687 1217 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 ZNF526Q8TF50 670 aaPredicted RBP10.39□□□□□ -0.75
VCAN-208ENST00000512590 CCP110O43303 1012 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 ERLIN1O75477 346 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 CCDC152Q4G0S7 254 aa10.39□□□□□ -0.75
VCAN-208ENST00000512590 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.39□□□□□ -0.75
VCAN-208ENST00000512590 SERPINC1P01008 464 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 GSDMBQ8TAX9 411 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 DYDC1Q8WWB3 177 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 CCDC113Q9H0I3 377 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 CCDC39Q9UFE4 941 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 ZNF397Q8NF99 534 aaPredicted RBP10.38□□□□□ -0.75
VCAN-208ENST00000512590 CEBPZQ03701 1054 aaKnown RBP10.38□□□□□ -0.75
VCAN-208ENST00000512590 TAF3Q5VWG9 929 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 TMOD4Q9NZQ9 345 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 DDX19BQ9UMR2 479 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 RAD54L2Q9Y4B4 1467 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 PTCD1O75127 700 aaKnown RBP10.38□□□□□ -0.75
VCAN-208ENST00000512590 GNAI3P08754 354 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 CFAP58Q5T655 872 aa10.38□□□□□ -0.75
VCAN-208ENST00000512590 SKOR2Q2VWA4 1001 aaPredicted RBP10.37□□□□□ -0.75
VCAN-208ENST00000512590 SRCIN1Q9C0H9 1055 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 STX6O43752 255 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 ATXN8OSP0DMR3 200 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 TNNT1P13805 278 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 SLC5A1P13866 664 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 ATP6V1E1P36543 226 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 MAP2K1Q02750 393 aaPredicted RBP10.37□□□□□ -0.75
VCAN-208ENST00000512590 GABPAQ06546 454 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 FAM212AQ96EL1 285 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 TCHPQ9BT92 498 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 PTPRGP23470 1445 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 BAG6P46379 1132 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 DPY19L2Q6NUT2 758 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 PPP1R14CQ8TAE6 165 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 KIF7Q2M1P5 1343 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 IQCEQ6IPM2 695 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 ARHGAP35Q9NRY4 1499 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 CCDC144AA2RUR9 1427 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 ZNF569Q5MCW4 686 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 CTNNA3Q9UI47 895 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 ITM2BQ9Y287 266 aa10.37□□□□□ -0.75
VCAN-208ENST00000512590 CEP164Q9UPV0 1460 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 BAG3O95817 575 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 PICK1Q9NRD5 415 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 F8W031 263 aaPredicted RBP10.36□□□□□ -0.75
VCAN-208ENST00000512590 CNGA1P29973 690 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 CCDC178Q5BJE1 867 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 NBPF6Q5VWK0 638 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 SPTY2D1Q68D10 685 aaPredicted RBP10.36□□□□□ -0.75
VCAN-208ENST00000512590 NBPF5PQ86XG9 351 aaPredicted RBP10.36□□□□□ -0.75
VCAN-208ENST00000512590 RNF34Q969K3 372 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 NBPF4Q96M43 638 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 TRMT112Q9UI30 125 aaKnown RBP10.36□□□□□ -0.75
VCAN-208ENST00000512590 CEP131Q9UPN4 1083 aa10.36□□□□□ -0.75
VCAN-208ENST00000512590 BTBD11A6QL63 1104 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 KIAA0754O94854 1291 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 TRAF1Q13077 416 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 KIAA1328Q86T90 577 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 HINFPQ9BQA5 517 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 PALM3A6NDB9 673 aaPredicted RBP10.35□□□□□ -0.75
VCAN-208ENST00000512590 GAS8O95995 478 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 OTUD7BQ6GQQ9 843 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 TTC30AQ86WT1 665 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 MPHOSPH9Q99550 1183 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 GOPCQ9HD26 462 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 PFDN4Q9NQP4 134 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 RANBP6O60518 1105 aaKnown RBP10.35□□□□□ -0.75
VCAN-208ENST00000512590 GTF2F1P35269 517 aaKnown RBP eCLIP10.35□□□□□ -0.75
VCAN-208ENST00000512590 GSTO1P78417 241 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 HDGFL1Q5TGJ6 251 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 CTCFLQ8NI51 663 aaPredicted RBP10.35□□□□□ -0.75
VCAN-208ENST00000512590 GOLGA1Q92805 767 aa10.35□□□□□ -0.75
VCAN-208ENST00000512590 NR1I2O75469 434 aa10.34□□□□□ -0.75
VCAN-208ENST00000512590 ELMSAN1Q6PJG2 1045 aa10.34□□□□□ -0.75
VCAN-208ENST00000512590 RSPH3Q86UC2 560 aa10.34□□□□□ -0.75
VCAN-208ENST00000512590 CCDC77Q9BR77 488 aa10.34□□□□□ -0.75
VCAN-208ENST00000512590 SERPINA10Q9UK55 444 aa10.34□□□□□ -0.75
VCAN-208ENST00000512590 PPP6R1Q9UPN7 881 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms