RNA–Protein interactions for RNA: ENST00000512304.2

PROM1-213, Transcript of prominin 1, humanhuman

TSL 4

Gene PROM1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-213ENST00000512304 EDC4Q6P2E9 1401 aaKnown RBP13.05□□□□□ -0.32
PROM1-213ENST00000512304 LOC102724428A0A0B4J2F2 783 aa13.03□□□□□ -0.32
PROM1-213ENST00000512304 SSFA2P28290 1259 aa13.03□□□□□ -0.32
PROM1-213ENST00000512304 SIK1P57059 783 aa13.03□□□□□ -0.32
PROM1-213ENST00000512304 HSP90AB2PQ58FF8 381 aa13.03□□□□□ -0.32
PROM1-213ENST00000512304 C16orf71Q8IYS4 520 aaPredicted RBP13.03□□□□□ -0.32
PROM1-213ENST00000512304 RAPGEF4Q8WZA2 1011 aa13.03□□□□□ -0.32
PROM1-213ENST00000512304 TATP17735 454 aaPredicted RBP13.02□□□□□ -0.33
PROM1-213ENST00000512304 FSTL1Q12841 308 aa13.02□□□□□ -0.33
PROM1-213ENST00000512304 KIAA1551Q9HCM1 1747 aa13.02□□□□□ -0.33
PROM1-213ENST00000512304 RGPD2P0DJD1 1756 aa13.02□□□□□ -0.33
PROM1-213ENST00000512304 NEUROD1Q13562 356 aa13.01□□□□□ -0.33
PROM1-213ENST00000512304 COG3Q96JB2 828 aa13.01□□□□□ -0.33
PROM1-213ENST00000512304 SLC4A9Q96Q91 983 aa13.01□□□□□ -0.33
PROM1-213ENST00000512304 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
PROM1-213ENST00000512304 RNF181Q9P0P0 153 aa13.01□□□□□ -0.33
PROM1-213ENST00000512304 C10orf71Q711Q0 1435 aa13.01□□□□□ -0.33
PROM1-213ENST00000512304 SLC34A2O95436 690 aa13□□□□□ -0.33
PROM1-213ENST00000512304 CHRNA5P30532 468 aa13□□□□□ -0.33
PROM1-213ENST00000512304 TGFB2P61812 414 aa13□□□□□ -0.33
PROM1-213ENST00000512304 GGNBP2Q9H3C7 697 aa13□□□□□ -0.33
PROM1-213ENST00000512304 NSD3Q9BZ95 1437 aa12.99□□□□□ -0.33
PROM1-213ENST00000512304 PCDH11XQ9BZA7 1347 aa12.99□□□□□ -0.33
PROM1-213ENST00000512304 PCDH11YQ9BZA8 1340 aa12.99□□□□□ -0.33
PROM1-213ENST00000512304 RASSF7Q02833 373 aa12.99□□□□□ -0.33
PROM1-213ENST00000512304 SMARCC1Q92922 1105 aaPredicted RBP12.99□□□□□ -0.33
PROM1-213ENST00000512304 GYS1P13807 737 aa12.98□□□□□ -0.33
PROM1-213ENST00000512304 ATP6V1AP38606 617 aa12.98□□□□□ -0.33
PROM1-213ENST00000512304 ARHGEF1Q92888 912 aaKnown RBP12.98□□□□□ -0.33
PROM1-213ENST00000512304 ATG3Q9NT62 314 aa12.98□□□□□ -0.33
PROM1-213ENST00000512304 TERF2IPQ9NYB0 399 aa12.98□□□□□ -0.33
PROM1-213ENST00000512304 N4BP2Q86UW6 1770 aaPredicted RBP12.98□□□□□ -0.33
PROM1-213ENST00000512304 TMF1P82094 1093 aa12.97□□□□□ -0.33
PROM1-213ENST00000512304 DCAF5Q96JK2 942 aa12.97□□□□□ -0.33
PROM1-213ENST00000512304 SRP68Q9UHB9 627 aaKnown RBP12.97□□□□□ -0.33
PROM1-213ENST00000512304 UBR3Q6ZT12 1888 aa12.96□□□□□ -0.33
PROM1-213ENST00000512304 DDR1Q08345 913 aa12.96□□□□□ -0.33
PROM1-213ENST00000512304 TAF1LQ8IZX4 1826 aa12.96□□□□□ -0.33
PROM1-213ENST00000512304 CGNL1Q0VF96 1302 aa12.95□□□□□ -0.34
PROM1-213ENST00000512304 FYB1O15117 783 aa12.95□□□□□ -0.34
PROM1-213ENST00000512304 TRAPPC3LQ5T215 181 aa12.95□□□□□ -0.34
PROM1-213ENST00000512304 SMC1BQ8NDV3 1235 aa12.95□□□□□ -0.34
PROM1-213ENST00000512304 KDM2BQ8NHM5 1336 aa12.94□□□□□ -0.34
PROM1-213ENST00000512304 NKX1-1Q15270 411 aaPredicted RBP12.94□□□□□ -0.34
PROM1-213ENST00000512304 CARD11Q9BXL7 1154 aa12.94□□□□□ -0.34
PROM1-213ENST00000512304 CCDC87Q9NVE4 849 aa12.94□□□□□ -0.34
PROM1-213ENST00000512304 TMOD3Q9NYL9 352 aa12.94□□□□□ -0.34
PROM1-213ENST00000512304 MKRN1Q9UHC7 482 aaKnown RBP12.94□□□□□ -0.34
PROM1-213ENST00000512304 EMILIN1Q9Y6C2 1016 aa12.94□□□□□ -0.34
PROM1-213ENST00000512304 POTECB2RU33 542 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 FOXN1O15353 648 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 FKBP8Q14318 412 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 DALRD3Q5D0E6 543 aaKnown RBP12.93□□□□□ -0.34
PROM1-213ENST00000512304 NLGN1Q8N2Q7 840 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 PIM2Q9P1W9 311 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 RTCBQ9Y3I0 505 aaKnown RBP12.93□□□□□ -0.34
PROM1-213ENST00000512304 RTL1A6NKG5 1358 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 PLEKHG2Q9H7P9 1386 aa12.93□□□□□ -0.34
PROM1-213ENST00000512304 MAP2P11137 1827 aaKnown RBP12.92□□□□□ -0.34
PROM1-213ENST00000512304 POTEIP0CG38 1075 aa12.92□□□□□ -0.34
PROM1-213ENST00000512304 POTEJP0CG39 1038 aa12.92□□□□□ -0.34
PROM1-213ENST00000512304 PARP3Q9Y6F1 533 aa12.92□□□□□ -0.34
PROM1-213ENST00000512304 INSRP06213 1382 aa12.92□□□□□ -0.34
PROM1-213ENST00000512304 TESK2Q96S53 571 aa12.91□□□□□ -0.34
PROM1-213ENST00000512304 KDRP35968 1356 aa12.91□□□□□ -0.34
PROM1-213ENST00000512304 SMG6Q86US8 1419 aaKnown RBP12.89□□□□□ -0.35
PROM1-213ENST00000512304 PHKG2P15735 406 aa12.89□□□□□ -0.35
PROM1-213ENST00000512304 RFC4P35249 363 aa12.89□□□□□ -0.35
PROM1-213ENST00000512304 FAM161AQ3B820 660 aa12.89□□□□□ -0.35
PROM1-213ENST00000512304 C4AP0C0L4 1744 aa12.88□□□□□ -0.35
PROM1-213ENST00000512304 KIF13BQ9NQT8 1826 aa12.88□□□□□ -0.35
PROM1-213ENST00000512304 PPM1GO15355 546 aaPredicted RBP12.88□□□□□ -0.35
PROM1-213ENST00000512304 RPS6KA4O75676 772 aa12.88□□□□□ -0.35
PROM1-213ENST00000512304 EYA1Q99502 592 aa12.88□□□□□ -0.35
PROM1-213ENST00000512304 ST20-MTHFSA0A0A6YYL1 179 aa12.87□□□□□ -0.35
PROM1-213ENST00000512304 GLTPD2A6NH11 291 aa12.87□□□□□ -0.35
PROM1-213ENST00000512304 VEGFAP15692 232 aaPredicted RBP12.87□□□□□ -0.35
PROM1-213ENST00000512304 SPG7Q9UQ90 795 aa12.87□□□□□ -0.35
PROM1-213ENST00000512304 ITGB4P16144 1822 aa12.86□□□□□ -0.35
PROM1-213ENST00000512304 FLT4P35916 1363 aa12.86□□□□□ -0.35
PROM1-213ENST00000512304 PKD1L3Q7Z443 1732 aa12.86□□□□□ -0.35
PROM1-213ENST00000512304 NFKBIEO00221 500 aa12.86□□□□□ -0.35
PROM1-213ENST00000512304 POLRMTO00411 1230 aaKnown RBP12.86□□□□□ -0.35
PROM1-213ENST00000512304 PTCD1O75127 700 aaKnown RBP12.85□□□□□ -0.35
PROM1-213ENST00000512304 RC3H1Q5TC82 1133 aaKnown RBP12.85□□□□□ -0.35
PROM1-213ENST00000512304 CARD14Q9BXL6 1004 aa12.85□□□□□ -0.35
PROM1-213ENST00000512304 KDM6AO15550 1401 aaPredicted RBP12.85□□□□□ -0.35
PROM1-213ENST00000512304 NCAPD2Q15021 1401 aa12.85□□□□□ -0.35
PROM1-213ENST00000512304 CNTNAP4Q9C0A0 1308 aa12.85□□□□□ -0.35
PROM1-213ENST00000512304 TM4SF1P30408 202 aa12.84□□□□□ -0.35
PROM1-213ENST00000512304 CRKLP46109 303 aaKnown RBP12.84□□□□□ -0.35
PROM1-213ENST00000512304 ZBTB12Q9Y330 459 aaPredicted RBP12.84□□□□□ -0.35
PROM1-213ENST00000512304 USP42Q9H9J4 1324 aaKnown RBP12.84□□□□□ -0.35
PROM1-213ENST00000512304 LMNB1P20700 586 aa12.83□□□□□ -0.36
PROM1-213ENST00000512304 HMGB2P26583 209 aaKnown RBP12.83□□□□□ -0.36
PROM1-213ENST00000512304 LBX1P52954 281 aa12.83□□□□□ -0.36
PROM1-213ENST00000512304 IFNL2Q8IZJ0 200 aa12.83□□□□□ -0.36
PROM1-213ENST00000512304 PUS7Q96PZ0 661 aaKnown RBP12.83□□□□□ -0.36
PROM1-213ENST00000512304 BRCA1P38398 1863 aaKnown RBP12.82□□□□□ -0.36
PROM1-213ENST00000512304 VEGFBP49765 207 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms