RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 KLHL40Q2TBA0 621 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC30Q5VVM6 783 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 TSG101Q99816 390 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 PDRG1Q9NUG6 133 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 C11orf95C9JLR9 678 aaPredicted RBP13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 ATP2B1P20020 1258 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 HLTFQ14527 1009 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 SOGA3Q5TF21 947 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 EID1Q9Y6B2 187 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 SCAPERQ9BY12 1400 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 FOXD1Q16676 465 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 NEUROD6Q96NK8 337 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 IBSPP21815 317 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 UBE4AQ14139 1066 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 GRIPAP1Q4V328 841 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 LARP1Q6PKG0 1096 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 CTCFLQ8NI51 663 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 NEBLO76041 1014 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 CAPN2P17655 700 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 LACTBP83111 547 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC158Q5M9N0 1113 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 MAATS1Q7Z4T9 603 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 C16orf45Q96MC5 204 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 HOMER2Q9NSB8 354 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 TSPYL4Q9UJ04 414 aa13.01□□□□□ -0.33
LIMCH1-208ENST00000508501 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13□□□□□ -0.33
LIMCH1-208ENST00000508501 IFT74Q96LB3 600 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 RAI14Q9P0K7 980 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 FEZ2Q9UHY8 353 aaPredicted RBP13□□□□□ -0.33
LIMCH1-208ENST00000508501 ANAPC4Q9UJX5 808 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 SLU7O95391 586 aaKnown RBP13□□□□□ -0.33
LIMCH1-208ENST00000508501 MAP4K4O95819 1239 aaPredicted RBP13□□□□□ -0.33
LIMCH1-208ENST00000508501 STX1AQ16623 288 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 CACNA2D4Q7Z3S7 1137 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 CTAGE15A4D2H0 777 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 CTAGE8P0CG41 777 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 EIF2S2P20042 333 aaKnown RBP13□□□□□ -0.33
LIMCH1-208ENST00000508501 PIP4K2BP78356 416 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 CTAGE6Q86UF2 777 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 CTAGE4Q8IX94 777 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 CEBPZQ03701 1054 aaKnown RBP13□□□□□ -0.33
LIMCH1-208ENST00000508501 TCHPQ9BT92 498 aa13□□□□□ -0.33
LIMCH1-208ENST00000508501 GGT6Q6P531 493 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 NUP133Q8WUM0 1156 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC69A6NI79 296 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC178Q5BJE1 867 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC18Q5T9S5 1454 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 MAP3K9P80192 1104 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 RPAP2Q8IXW5 612 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 TMEM132AQ24JP5 1023 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 KANK4Q5T7N3 995 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 KANK3Q6NY19 840 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 CEP57Q86XR8 500 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 CACNA2D3Q8IZS8 1091 aa12.99□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC160A6NGH7 325 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 PRPHP41219 470 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 CHD1LQ86WJ1 897 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 WDR63Q8IWG1 891 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 DHX37Q8IY37 1157 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC114Q96M63 670 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 ZKSCAN5Q9Y2L8 839 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 ZBTB17Q13105 803 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 TSNARE1Q96NA8 513 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 GOPCQ9HD26 462 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 TUBB2AQ13885 445 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 TUBB2BQ9BVA1 445 aa12.98□□□□□ -0.33
LIMCH1-208ENST00000508501 NOLC1Q14978 699 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 RIC3Q7Z5B4 369 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 FERMT1Q9BQL6 677 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 VCXQ9H320 206 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 SUDS3Q9H7L9 328 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 ADCY5O95622 1261 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 NAA25Q14CX7 972 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 GNL3LQ9NVN8 582 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 HYPKQ9NX55 129 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 ATRIPQ8WXE1 791 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
LIMCH1-208ENST00000508501 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 MPHOSPH10O00566 681 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC172P0C7W6 258 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC129Q6ZRS4 1044 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 GOLGA1Q92805 767 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 IKBKGQ9Y6K9 419 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 CCDC196A0A1B0GTZ2 297 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 C10orf67Q8IYJ2 551 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 MPNDQ8N594 471 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 RASAL2Q9UJF2 1139 aa12.96□□□□□ -0.33
LIMCH1-208ENST00000508501 GNG11P61952 73 aa12.96□□□□□ -0.34
LIMCH1-208ENST00000508501 SPAG1Q07617 926 aa12.96□□□□□ -0.34
LIMCH1-208ENST00000508501 CETN1Q12798 172 aa12.96□□□□□ -0.34
LIMCH1-208ENST00000508501 SETDB1Q15047 1291 aa12.96□□□□□ -0.34
LIMCH1-208ENST00000508501 RAB34Q9BZG1 259 aa12.96□□□□□ -0.34
LIMCH1-208ENST00000508501 MKRN1Q9UHC7 482 aaKnown RBP12.96□□□□□ -0.34
LIMCH1-208ENST00000508501 ARHGAP25P42331 645 aa12.95□□□□□ -0.34
LIMCH1-208ENST00000508501 MVPQ14764 893 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-208ENST00000508501 CROCCP2Q86T23 111 aa12.95□□□□□ -0.34
LIMCH1-208ENST00000508501 VCX3BQ9H321 246 aa12.95□□□□□ -0.34
LIMCH1-208ENST00000508501 CCDC12Q8WUD4 166 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-208ENST00000508501 NACADO15069 1562 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms