RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 CAPN15O75808 1086 aa15.08■□□□□ 0
PTPN13-207ENST00000508063 AMER1Q5JTC6 1135 aaPredicted RBP15.08■□□□□ 0
PTPN13-207ENST00000508063 COL23A1Q86Y22 540 aaPredicted RBP15.08■□□□□ 0
PTPN13-207ENST00000508063 LOC102724428A0A0B4J2F2 783 aa15.07■□□□□ 0
PTPN13-207ENST00000508063 ERVV-2B6SEH9 535 aa15.07■□□□□ 0
PTPN13-207ENST00000508063 SIK1P57059 783 aa15.07■□□□□ 0
PTPN13-207ENST00000508063 DCAF5Q96JK2 942 aa15.07■□□□□ 0
PTPN13-207ENST00000508063 C4BP0C0L5 1744 aa15.06■□□□□ 0
PTPN13-207ENST00000508063 C1orf141Q5JVX7 400 aa15.06■□□□□ 0
PTPN13-207ENST00000508063 KLHL34Q8N239 644 aa15.06■□□□□ 0
PTPN13-207ENST00000508063 ZNF530Q6P9A1 599 aaPredicted RBP15.05■□□□□ -0
PTPN13-207ENST00000508063 IL13P35225 146 aa15.04■□□□□ -0
PTPN13-207ENST00000508063 SULT6B1Q6IMI4 303 aa15.04■□□□□ -0
PTPN13-207ENST00000508063 ATG3Q9NT62 314 aa15.04■□□□□ -0
PTPN13-207ENST00000508063 ASAP1Q9ULH1 1129 aa15.04■□□□□ -0
PTPN13-207ENST00000508063 SSFA2P28290 1259 aa15.03■□□□□ -0
PTPN13-207ENST00000508063 ATP6V1AP38606 617 aa15.03■□□□□ -0
PTPN13-207ENST00000508063 MTHFSP49914 203 aa15.03■□□□□ -0
PTPN13-207ENST00000508063 GPR162Q16538 588 aa15.03■□□□□ -0
PTPN13-207ENST00000508063 KDRP35968 1356 aa15.02■□□□□ -0
PTPN13-207ENST00000508063 PER1O15534 1290 aaPredicted RBP15.02■□□□□ -0
PTPN13-207ENST00000508063 CABP4P57796 275 aa15.02■□□□□ -0
PTPN13-207ENST00000508063 AEBP1Q8IUX7 1158 aa15.02■□□□□ -0
PTPN13-207ENST00000508063 UBR3Q6ZT12 1888 aa15.01□□□□□ -0.01
PTPN13-207ENST00000508063 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.01□□□□□ -0.01
PTPN13-207ENST00000508063 PHF14O94880 888 aa15.01□□□□□ -0.01
PTPN13-207ENST00000508063 MSL1Q68DK7 614 aa15.01□□□□□ -0.01
PTPN13-207ENST00000508063 LINC00116Q8NCU8 138 aa15.01□□□□□ -0.01
PTPN13-207ENST00000508063 NPC1L1Q9UHC9 1359 aa15□□□□□ -0.01
PTPN13-207ENST00000508063 CC2D1BQ5T0F9 858 aaKnown RBP15□□□□□ -0.01
PTPN13-207ENST00000508063 RBM42Q9BTD8 480 aaKnown RBP15□□□□□ -0.01
PTPN13-207ENST00000508063 ZNF831Q5JPB2 1677 aa15□□□□□ -0.01
PTPN13-207ENST00000508063 CHD4Q14839 1912 aa15□□□□□ -0.01
PTPN13-207ENST00000508063 GNPATO15228 680 aa14.99□□□□□ -0.01
PTPN13-207ENST00000508063 ITPK1Q13572 414 aa14.99□□□□□ -0.01
PTPN13-207ENST00000508063 KDM6AO15550 1401 aaPredicted RBP14.99□□□□□ -0.01
PTPN13-207ENST00000508063 DIAPH1O60610 1272 aaKnown RBP14.98□□□□□ -0.01
PTPN13-207ENST00000508063 AKAP4Q5JQC9 854 aa14.98□□□□□ -0.01
PTPN13-207ENST00000508063 PELP1Q8IZL8 1130 aaKnown RBP14.98□□□□□ -0.01
PTPN13-207ENST00000508063 CD2APQ9Y5K6 639 aa14.98□□□□□ -0.01
PTPN13-207ENST00000508063 RC3H1Q5TC82 1133 aaKnown RBP14.97□□□□□ -0.01
PTPN13-207ENST00000508063 NLGN2Q8NFZ4 835 aa14.97□□□□□ -0.01
PTPN13-207ENST00000508063 RTCBQ9Y3I0 505 aaKnown RBP14.97□□□□□ -0.01
PTPN13-207ENST00000508063 GRIN3BO60391 1043 aa14.96□□□□□ -0.01
PTPN13-207ENST00000508063 AMIGO3Q86WK7 504 aa14.96□□□□□ -0.01
PTPN13-207ENST00000508063 NFATC2IPQ8NCF5 419 aa14.96□□□□□ -0.01
PTPN13-207ENST00000508063 HMOX1P09601 288 aa14.95□□□□□ -0.02
PTPN13-207ENST00000508063 TRAPPC3LQ5T215 181 aa14.95□□□□□ -0.02
PTPN13-207ENST00000508063 SCN11AQ9UI33 1791 aa14.95□□□□□ -0.02
PTPN13-207ENST00000508063 CNTNAP4Q9C0A0 1308 aa14.94□□□□□ -0.02
PTPN13-207ENST00000508063 COL5A3P25940 1745 aaPredicted RBP14.93□□□□□ -0.02
PTPN13-207ENST00000508063 PTCD1O75127 700 aaKnown RBP14.93□□□□□ -0.02
PTPN13-207ENST00000508063 SMIM5Q71RC9 77 aa14.93□□□□□ -0.02
PTPN13-207ENST00000508063 NLGN1Q8N2Q7 840 aa14.93□□□□□ -0.02
PTPN13-207ENST00000508063 SLC4A9Q96Q91 983 aa14.93□□□□□ -0.02
PTPN13-207ENST00000508063 ZNF219Q9P2Y4 722 aaPredicted RBP14.93□□□□□ -0.02
PTPN13-207ENST00000508063 UTRNP46939 3433 aa14.92□□□□□ -0.02
PTPN13-207ENST00000508063 RPS6KA4O75676 772 aa14.92□□□□□ -0.02
PTPN13-207ENST00000508063 RFC4P35249 363 aa14.92□□□□□ -0.02
PTPN13-207ENST00000508063 CNGB1Q14028 1251 aaPredicted RBP14.92□□□□□ -0.02
PTPN13-207ENST00000508063 ZNF784Q8NCA9 323 aaPredicted RBP14.92□□□□□ -0.02
PTPN13-207ENST00000508063 CFAP53Q96M91 514 aa14.92□□□□□ -0.02
PTPN13-207ENST00000508063 SLC52A2Q9HAB3 445 aa14.92□□□□□ -0.02
PTPN13-207ENST00000508063 U2SURPO15042 1029 aaKnown RBP14.91□□□□□ -0.02
PTPN13-207ENST00000508063 RNMTO43148 476 aaKnown RBP14.9□□□□□ -0.02
PTPN13-207ENST00000508063 MTHFSDQ2M296 383 aaKnown RBP14.9□□□□□ -0.02
PTPN13-207ENST00000508063 ARHGEF1Q92888 912 aaKnown RBP14.9□□□□□ -0.02
PTPN13-207ENST00000508063 MRC1P22897 1456 aa14.89□□□□□ -0.03
PTPN13-207ENST00000508063 CICQ96RK0 1608 aaPredicted RBP14.89□□□□□ -0.03
PTPN13-207ENST00000508063 MMP10P09238 476 aa14.89□□□□□ -0.03
PTPN13-207ENST00000508063 YBX3P16989 372 aaKnown RBP eCLIP14.89□□□□□ -0.03
PTPN13-207ENST00000508063 CRKLP46109 303 aaKnown RBP14.89□□□□□ -0.03
PTPN13-207ENST00000508063 GAS2L2Q8NHY3 880 aa14.89□□□□□ -0.03
PTPN13-207ENST00000508063 LGR6Q9HBX8 967 aa14.89□□□□□ -0.03
PTPN13-207ENST00000508063 VIRMAQ69YN4 1812 aaKnown RBP14.89□□□□□ -0.03
PTPN13-207ENST00000508063 COL3A1P02461 1466 aaPredicted RBP14.89□□□□□ -0.03
PTPN13-207ENST00000508063 NUDCQ9Y266 331 aa14.88□□□□□ -0.03
PTPN13-207ENST00000508063 DSG3P32926 999 aa14.87□□□□□ -0.03
PTPN13-207ENST00000508063 MYH14Q7Z406 1995 aaKnown RBP14.87□□□□□ -0.03
PTPN13-207ENST00000508063 ADAMTS7Q9UKP4 1686 aa14.87□□□□□ -0.03
PTPN13-207ENST00000508063 TJP1Q07157 1748 aa14.86□□□□□ -0.03
PTPN13-207ENST00000508063 GOLGB1Q14789 3259 aaKnown RBP14.86□□□□□ -0.03
PTPN13-207ENST00000508063 GNAT3A8MTJ3 354 aa14.86□□□□□ -0.03
PTPN13-207ENST00000508063 ATXN8OSP0DMR3 200 aa14.86□□□□□ -0.03
PTPN13-207ENST00000508063 GYS1P13807 737 aa14.86□□□□□ -0.03
PTPN13-207ENST00000508063 CCDC87Q9NVE4 849 aa14.86□□□□□ -0.03
PTPN13-207ENST00000508063 PARP3Q9Y6F1 533 aa14.86□□□□□ -0.03
PTPN13-207ENST00000508063 TGFB2P61812 414 aa14.85□□□□□ -0.03
PTPN13-207ENST00000508063 TEFQ10587 303 aa14.85□□□□□ -0.03
PTPN13-207ENST00000508063 TTC5Q8N0Z6 440 aa14.85□□□□□ -0.03
PTPN13-207ENST00000508063 VSIG10Q8N0Z9 540 aa14.85□□□□□ -0.03
PTPN13-207ENST00000508063 C4AP0C0L4 1744 aa14.85□□□□□ -0.03
PTPN13-207ENST00000508063 SLC39A6Q13433 755 aa14.84□□□□□ -0.03
PTPN13-207ENST00000508063 INTS5Q6P9B9 1019 aaKnown RBP14.84□□□□□ -0.03
PTPN13-207ENST00000508063 DNAJC10Q8IXB1 793 aa14.84□□□□□ -0.03
PTPN13-207ENST00000508063 KIF13BQ9NQT8 1826 aa14.84□□□□□ -0.03
PTPN13-207ENST00000508063 USP42Q9H9J4 1324 aaKnown RBP14.84□□□□□ -0.03
PTPN13-207ENST00000508063 ZPR1O75312 459 aa14.83□□□□□ -0.04
PTPN13-207ENST00000508063 CYP19A1P11511 503 aaPredicted RBP14.83□□□□□ -0.04
PTPN13-207ENST00000508063 PPP2R1AP30153 589 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms