RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 PHKA2P46019 1235 aa9.56□□□□□ -0.88
SMC4-227ENST00000497984 VAC14Q08AM6 782 aa9.56□□□□□ -0.88
SMC4-227ENST00000497984 KANK3Q6NY19 840 aa9.56□□□□□ -0.88
SMC4-227ENST00000497984 PRM3Q9NNZ6 103 aa9.56□□□□□ -0.88
SMC4-227ENST00000497984 DNMT3AQ9Y6K1 912 aaPredicted RBP9.56□□□□□ -0.88
SMC4-227ENST00000497984 BCRP11274 1271 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 MX2P20592 715 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 USP4Q13107 963 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 UBAP2LQ14157 1087 aaKnown RBP9.55□□□□□ -0.88
SMC4-227ENST00000497984 SLFNL1Q499Z3 407 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 C4orf17Q53FE4 359 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 ESCO1Q5FWF5 840 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 RNF135Q8IUD6 432 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 ETNK1Q9HBU6 452 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 GDPD2Q9HCC8 539 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 GPAMQ9HCL2 828 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 ENAMQ9NRM1 1142 aa9.55□□□□□ -0.88
SMC4-227ENST00000497984 A0A1B0GTH6 734 aa9.54□□□□□ -0.88
SMC4-227ENST00000497984 GNASQ5JWF2 1037 aa9.53□□□□□ -0.88
SMC4-227ENST00000497984 CFHR5Q9BXR6 569 aa9.53□□□□□ -0.88
SMC4-227ENST00000497984 OXLD1Q5BKU9 147 aa9.52□□□□□ -0.89
SMC4-227ENST00000497984 TMEM214Q6NUQ4 689 aaKnown RBP9.52□□□□□ -0.89
SMC4-227ENST00000497984 LRRC4BQ9NT99 713 aa9.52□□□□□ -0.89
SMC4-227ENST00000497984 CNTNAP5Q8WYK1 1306 aa9.52□□□□□ -0.89
SMC4-227ENST00000497984 SCNN1DP51172 638 aa9.51□□□□□ -0.89
SMC4-227ENST00000497984 PPARGC1BQ86YN6 1023 aaKnown RBP9.51□□□□□ -0.89
SMC4-227ENST00000497984 RHBDD1Q8TEB9 315 aa9.51□□□□□ -0.89
SMC4-227ENST00000497984 OIP5O43482 229 aa9.5□□□□□ -0.89
SMC4-227ENST00000497984 MSX1P28360 303 aa9.5□□□□□ -0.89
SMC4-227ENST00000497984 ABL2P42684 1182 aa9.5□□□□□ -0.89
SMC4-227ENST00000497984 LBRQ14739 615 aaKnown RBP9.5□□□□□ -0.89
SMC4-227ENST00000497984 TLR1Q15399 786 aa9.5□□□□□ -0.89
SMC4-227ENST00000497984 RUBCNLQ9H714 662 aa9.5□□□□□ -0.89
SMC4-227ENST00000497984 NSFL1CQ9UNZ2 370 aaKnown RBP9.5□□□□□ -0.89
SMC4-227ENST00000497984 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.49□□□□□ -0.89
SMC4-227ENST00000497984 GTF2E1P29083 439 aaPredicted RBP9.49□□□□□ -0.89
SMC4-227ENST00000497984 MAP2K3P46734 347 aa9.49□□□□□ -0.89
SMC4-227ENST00000497984 MCM6Q14566 821 aa9.49□□□□□ -0.89
SMC4-227ENST00000497984 SIRT1Q96EB6 747 aa9.49□□□□□ -0.89
SMC4-227ENST00000497984 WASHC4Q2M389 1173 aa9.48□□□□□ -0.89
SMC4-227ENST00000497984 GPAT2Q6NUI2 795 aa9.48□□□□□ -0.89
SMC4-227ENST00000497984 PLPP7Q8NBV4 271 aa9.48□□□□□ -0.89
SMC4-227ENST00000497984 NEDD1Q8NHV4 660 aa9.48□□□□□ -0.89
SMC4-227ENST00000497984 OXCT2Q9BYC2 517 aaPredicted RBP9.48□□□□□ -0.89
SMC4-227ENST00000497984 PHF20L1A8MW92 1017 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 INHAP05111 366 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 GDF10P55107 478 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 MAP7D1Q3KQU3 841 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 KLRG1Q96E93 195 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 CRISPLD1Q9H336 500 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 NDFIP2Q9NV92 336 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 PHF24Q9UPV7 400 aa9.47□□□□□ -0.89
SMC4-227ENST00000497984 IGHA1P01876 353 aa9.46□□□□□ -0.9
SMC4-227ENST00000497984 CSB-PGBD3P0DP91 1061 aa9.46□□□□□ -0.9
SMC4-227ENST00000497984 FOXK2Q01167 660 aa9.46□□□□□ -0.9
SMC4-227ENST00000497984 C1orf229Q6ZS94 237 aaPredicted RBP9.46□□□□□ -0.9
SMC4-227ENST00000497984 PGBD3Q8N328 593 aa9.46□□□□□ -0.9
SMC4-227ENST00000497984 BEND7Q8N7W2 519 aaPredicted RBP9.46□□□□□ -0.9
SMC4-227ENST00000497984 SHISA8B8ZZ34 492 aa9.45□□□□□ -0.9
SMC4-227ENST00000497984 DCAF5Q96JK2 942 aa9.45□□□□□ -0.9
SMC4-227ENST00000497984 KRTAP9-2Q9BYQ4 174 aa9.45□□□□□ -0.9
SMC4-227ENST00000497984 ATXN7L1Q9ULK2 861 aaPredicted RBP9.45□□□□□ -0.9
SMC4-227ENST00000497984 C2CD2LO14523 706 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 ITGB2P05107 769 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 SOX11P35716 441 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 PLA2G4AP47712 749 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 SEMA3FQ13275 785 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 EFHC2Q5JST6 749 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 PODNQ7Z5L7 613 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 ZNF295-AS1Q8N0V1 137 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 ABHD17AQ96GS6 310 aa9.44□□□□□ -0.9
SMC4-227ENST00000497984 TMEM229AB2RXF0 380 aa9.43□□□□□ -0.9
SMC4-227ENST00000497984 PIK3CDO00329 1044 aa9.43□□□□□ -0.9
SMC4-227ENST00000497984 BNIP3LO60238 219 aa9.43□□□□□ -0.9
SMC4-227ENST00000497984 ATP4AP20648 1035 aa9.43□□□□□ -0.9
SMC4-227ENST00000497984 DNAAF2Q9NVR5 837 aaKnown RBP9.43□□□□□ -0.9
SMC4-227ENST00000497984 COG6Q9Y2V7 657 aa9.43□□□□□ -0.9
SMC4-227ENST00000497984 SMTNP53814 917 aa9.42□□□□□ -0.9
SMC4-227ENST00000497984 SNRPNP63162 240 aaKnown RBP9.42□□□□□ -0.9
SMC4-227ENST00000497984 PLA2G4EQ3MJ16 856 aa9.42□□□□□ -0.9
SMC4-227ENST00000497984 TBC1D9Q6ZT07 1266 aa9.42□□□□□ -0.9
SMC4-227ENST00000497984 KRTAP9-6A0A140TA67 174 aa9.41□□□□□ -0.9
SMC4-227ENST00000497984 FGFR3P22607 806 aa9.41□□□□□ -0.9
SMC4-227ENST00000497984 CTBSQ01459 385 aa9.41□□□□□ -0.9
SMC4-227ENST00000497984 GALNT6Q8NCL4 622 aa9.41□□□□□ -0.9
SMC4-227ENST00000497984 SLC4A9Q96Q91 983 aa9.41□□□□□ -0.9
SMC4-227ENST00000497984 GDF2Q9UK05 429 aaPredicted RBP9.41□□□□□ -0.9
SMC4-227ENST00000497984 IQSEC3Q9UPP2 1182 aaPredicted RBP9.41□□□□□ -0.9
SMC4-227ENST00000497984 PCDHGA11Q9Y5H2 935 aa9.41□□□□□ -0.9
SMC4-227ENST00000497984 MTFR1Q15390 333 aa9.4□□□□□ -0.9
SMC4-227ENST00000497984 GOLGA6L1Q8N7Z2 621 aa9.4□□□□□ -0.9
SMC4-227ENST00000497984 C1orf216Q8TAB5 229 aa9.4□□□□□ -0.9
SMC4-227ENST00000497984 NIFKQ9BYG3 293 aaKnown RBP9.4□□□□□ -0.9
SMC4-227ENST00000497984 SERTAD1Q9UHV2 236 aa9.4□□□□□ -0.9
SMC4-227ENST00000497984 USP3Q9Y6I4 520 aa9.4□□□□□ -0.9
SMC4-227ENST00000497984 BMP4P12644 408 aa9.39□□□□□ -0.91
SMC4-227ENST00000497984 EDARADDQ8WWZ3 215 aa9.39□□□□□ -0.91
SMC4-227ENST00000497984 ZCCHC2Q9C0B9 1178 aaKnown RBP9.39□□□□□ -0.91
SMC4-227ENST00000497984 HCN2Q9UL51 889 aa9.39□□□□□ -0.91
SMC4-227ENST00000497984 HOXB4P17483 251 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms