RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CHD4Q14839 1912 aa15.84■□□□□ 0.13
COL6A3-213ENST00000493475 PHF14O94880 888 aa15.83■□□□□ 0.12
COL6A3-213ENST00000493475 MYCNP04198 464 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-213ENST00000493475 ANKRD26Q9UPS8 1709 aa15.82■□□□□ 0.12
COL6A3-213ENST00000493475 GIGYF1O75420 1035 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-213ENST00000493475 PHKG2P15735 406 aa15.82■□□□□ 0.12
COL6A3-213ENST00000493475 AMOTQ4VCS5 1084 aa15.82■□□□□ 0.12
COL6A3-213ENST00000493475 PLEKHO1Q53GL0 409 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-213ENST00000493475 NLGN2Q8NFZ4 835 aa15.82■□□□□ 0.12
COL6A3-213ENST00000493475 COL24A1Q17RW2 1714 aa15.82■□□□□ 0.12
COL6A3-213ENST00000493475 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.81■□□□□ 0.12
COL6A3-213ENST00000493475 ATP6V1AP38606 617 aa15.81■□□□□ 0.12
COL6A3-213ENST00000493475 EIF4A2Q14240 407 aaKnown RBP15.81■□□□□ 0.12
COL6A3-213ENST00000493475 MORC1Q86VD1 984 aa15.81■□□□□ 0.12
COL6A3-213ENST00000493475 TUBGCP6Q96RT7 1819 aa15.81■□□□□ 0.12
COL6A3-213ENST00000493475 KNSTRNQ9Y448 316 aa15.81■□□□□ 0.12
COL6A3-213ENST00000493475 C4BP0C0L5 1744 aa15.8■□□□□ 0.12
COL6A3-213ENST00000493475 ERVV-2B6SEH9 535 aa15.8■□□□□ 0.12
COL6A3-213ENST00000493475 GNPATO15228 680 aa15.8■□□□□ 0.12
COL6A3-213ENST00000493475 C1orf141Q5JVX7 400 aa15.8■□□□□ 0.12
COL6A3-213ENST00000493475 DCAF5Q96JK2 942 aa15.8■□□□□ 0.12
COL6A3-213ENST00000493475 PANK3Q9H999 370 aa15.8■□□□□ 0.12
COL6A3-213ENST00000493475 HSPA5P11021 654 aaKnown RBP15.79■□□□□ 0.12
COL6A3-213ENST00000493475 C1QTNF8P60827 252 aa15.79■□□□□ 0.12
COL6A3-213ENST00000493475 IGSF1Q8N6C5 1336 aa15.78■□□□□ 0.12
COL6A3-213ENST00000493475 SENP3-EIF4A1A0A087X0R7 540 aa15.78■□□□□ 0.12
COL6A3-213ENST00000493475 RTCBQ9Y3I0 505 aaKnown RBP15.78■□□□□ 0.12
COL6A3-213ENST00000493475 MAP2P11137 1827 aaKnown RBP15.78■□□□□ 0.12
COL6A3-213ENST00000493475 CABP4P57796 275 aa15.77■□□□□ 0.12
COL6A3-213ENST00000493475 ITGB4P16144 1822 aa15.76■□□□□ 0.11
COL6A3-213ENST00000493475 TRAPPC3LQ5T215 181 aa15.76■□□□□ 0.11
COL6A3-213ENST00000493475 ZNF530Q6P9A1 599 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-213ENST00000493475 LINC00116Q8NCU8 138 aa15.76■□□□□ 0.11
COL6A3-213ENST00000493475 ASAP1Q9ULH1 1129 aa15.76■□□□□ 0.11
COL6A3-213ENST00000493475 GOLGB1Q14789 3259 aaKnown RBP15.76■□□□□ 0.11
COL6A3-213ENST00000493475 TOGARAM1Q9Y4F4 1720 aa15.76■□□□□ 0.11
COL6A3-213ENST00000493475 TAF1LQ8IZX4 1826 aa15.75■□□□□ 0.11
COL6A3-213ENST00000493475 MTHFSP49914 203 aa15.75■□□□□ 0.11
COL6A3-213ENST00000493475 NLGN1Q8N2Q7 840 aa15.75■□□□□ 0.11
COL6A3-213ENST00000493475 ATG3Q9NT62 314 aa15.75■□□□□ 0.11
COL6A3-213ENST00000493475 YBX3P16989 372 aaKnown RBP eCLIP15.74■□□□□ 0.11
COL6A3-213ENST00000493475 RFC4P35249 363 aa15.73■□□□□ 0.11
COL6A3-213ENST00000493475 RC3H1Q5TC82 1133 aaKnown RBP15.72■□□□□ 0.11
COL6A3-213ENST00000493475 GPBP1L1Q9HC44 474 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-213ENST00000493475 MMP10P09238 476 aa15.71■□□□□ 0.11
COL6A3-213ENST00000493475 ITPK1Q13572 414 aa15.71■□□□□ 0.11
COL6A3-213ENST00000493475 CNTNAP4Q9C0A0 1308 aa15.7■□□□□ 0.1
COL6A3-213ENST00000493475 SULT6B1Q6IMI4 303 aa15.7■□□□□ 0.1
COL6A3-213ENST00000493475 CCDC87Q9NVE4 849 aa15.7■□□□□ 0.1
COL6A3-213ENST00000493475 UBR3Q6ZT12 1888 aa15.69■□□□□ 0.1
COL6A3-213ENST00000493475 TGFB2P61812 414 aa15.69■□□□□ 0.1
COL6A3-213ENST00000493475 PARP3Q9Y6F1 533 aa15.69■□□□□ 0.1
COL6A3-213ENST00000493475 KDRP35968 1356 aa15.69■□□□□ 0.1
COL6A3-213ENST00000493475 ATP10DQ9P241 1426 aa15.68■□□□□ 0.1
COL6A3-213ENST00000493475 RPS6KA4O75676 772 aa15.68■□□□□ 0.1
COL6A3-213ENST00000493475 PTCD1O75127 700 aaKnown RBP15.67■□□□□ 0.1
COL6A3-213ENST00000493475 AKAP4Q5JQC9 854 aa15.67■□□□□ 0.1
COL6A3-213ENST00000493475 ZNF831Q5JPB2 1677 aa15.67■□□□□ 0.1
COL6A3-213ENST00000493475 AMIGO3Q86WK7 504 aa15.66■□□□□ 0.1
COL6A3-213ENST00000493475 NFATC2IPQ8NCF5 419 aa15.66■□□□□ 0.1
COL6A3-213ENST00000493475 ARHGEF1Q92888 912 aaKnown RBP15.66■□□□□ 0.1
COL6A3-213ENST00000493475 AEBP1Q8IUX7 1158 aa15.65■□□□□ 0.1
COL6A3-213ENST00000493475 KDM6AO15550 1401 aaPredicted RBP15.64■□□□□ 0.09
COL6A3-213ENST00000493475 IL13P35225 146 aa15.64■□□□□ 0.09
COL6A3-213ENST00000493475 SMIM5Q71RC9 77 aa15.64■□□□□ 0.09
COL6A3-213ENST00000493475 ZPR1O75312 459 aa15.63■□□□□ 0.09
COL6A3-213ENST00000493475 CRKLP46109 303 aaKnown RBP15.63■□□□□ 0.09
COL6A3-213ENST00000493475 WWC3Q9ULE0 1092 aa15.63■□□□□ 0.09
COL6A3-213ENST00000493475 BCS1LQ9Y276 419 aa15.63■□□□□ 0.09
COL6A3-213ENST00000493475 DIAPH1O60610 1272 aaKnown RBP15.62■□□□□ 0.09
COL6A3-213ENST00000493475 GYS1P13807 737 aa15.62■□□□□ 0.09
COL6A3-213ENST00000493475 AMER1Q5JTC6 1135 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-213ENST00000493475 ZNF526Q8TF50 670 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-213ENST00000493475 SLC52A2Q9HAB3 445 aa15.62■□□□□ 0.09
COL6A3-213ENST00000493475 CICQ96RK0 1608 aaPredicted RBP15.61■□□□□ 0.09
COL6A3-213ENST00000493475 C10orf71Q711Q0 1435 aa15.61■□□□□ 0.09
COL6A3-213ENST00000493475 KIF7Q2M1P5 1343 aa15.61■□□□□ 0.09
COL6A3-213ENST00000493475 ADCY9O60503 1353 aa15.61■□□□□ 0.09
COL6A3-213ENST00000493475 PXDNLA1KZ92 1463 aa15.6■□□□□ 0.09
COL6A3-213ENST00000493475 FCHSD2O94868 740 aa15.6■□□□□ 0.09
COL6A3-213ENST00000493475 TTC5Q8N0Z6 440 aa15.6■□□□□ 0.09
COL6A3-213ENST00000493475 SLC4A9Q96Q91 983 aa15.6■□□□□ 0.09
COL6A3-213ENST00000493475 A0A0G2JLW4 131 aa15.59■□□□□ 0.09
COL6A3-213ENST00000493475 ARHGAP27Q6ZUM4 889 aa15.59■□□□□ 0.09
COL6A3-213ENST00000493475 NPM2Q86SE8 214 aaKnown RBP15.59■□□□□ 0.09
COL6A3-213ENST00000493475 PIM2Q9P1W9 311 aa15.59■□□□□ 0.09
COL6A3-213ENST00000493475 USP42Q9H9J4 1324 aaKnown RBP15.59■□□□□ 0.09
COL6A3-213ENST00000493475 COL5A3P25940 1745 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-213ENST00000493475 HMOX1P09601 288 aa15.58■□□□□ 0.08
COL6A3-213ENST00000493475 CC2D1BQ5T0F9 858 aaKnown RBP15.58■□□□□ 0.08
COL6A3-213ENST00000493475 C4AP0C0L4 1744 aa15.57■□□□□ 0.08
COL6A3-213ENST00000493475 RNMTO43148 476 aaKnown RBP15.57■□□□□ 0.08
COL6A3-213ENST00000493475 STARD3NLO95772 234 aa15.57■□□□□ 0.08
COL6A3-213ENST00000493475 DPEP1P16444 411 aa15.57■□□□□ 0.08
COL6A3-213ENST00000493475 DALRD3Q5D0E6 543 aaKnown RBP15.57■□□□□ 0.08
COL6A3-213ENST00000493475 VSIG10Q8N0Z9 540 aa15.57■□□□□ 0.08
COL6A3-213ENST00000493475 GAS2L2Q8NHY3 880 aa15.57■□□□□ 0.08
COL6A3-213ENST00000493475 CFAP53Q96M91 514 aa15.57■□□□□ 0.08
COL6A3-213ENST00000493475 TEFQ10587 303 aa15.56■□□□□ 0.08
COL6A3-213ENST00000493475 NPC1L1Q9UHC9 1359 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms