RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 KRT76Q01546 638 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 NCOA4Q13772 614 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 KRTAP5-3Q6L8H2 238 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 TRIM50Q86XT4 487 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 DEPDC4Q8N2C3 294 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 OSBPL3Q9H4L5 887 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 USP17L3A6NCW0 530 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 USP17L4A6NCW7 530 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 SLURP2P0DP57 97 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 CTSOP43234 321 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-208ENST00000490788 TSGA10IPQ3SY00 556 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 USP17L2Q6R6M4 530 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 TBC1D9Q6ZT07 1266 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 USP17L1Q7RTZ2 530 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 GPR161Q8N6U8 529 aaKnown RBP4.32□□□□□ -1.72
HMGB1-208ENST00000490788 ADAMTS19Q8TE59 1207 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 CCDC97Q96F63 343 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-208ENST00000490788 CNTNAP3BQ96NU0 1288 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 CNTNAP3Q9BZ76 1288 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 RAB6BQ9NRW1 208 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 CHIC2Q9UKJ5 165 aa4.32□□□□□ -1.72
HMGB1-208ENST00000490788 GPC1P35052 558 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 GTF2IP78347 998 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 PTSQ03393 145 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 CLN3Q13286 438 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 TMEM214Q6NUQ4 689 aaKnown RBP4.31□□□□□ -1.72
HMGB1-208ENST00000490788 LYSMD3Q7Z3D4 306 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 CNKSR1Q969H4 720 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 COL25A1Q9BXS0 654 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-208ENST00000490788 PPP1R12CQ9BZL4 782 aa4.31□□□□□ -1.72
HMGB1-208ENST00000490788 TFIP11Q9UBB9 837 aaKnown RBP4.31□□□□□ -1.72
HMGB1-208ENST00000490788 PALM3A6NDB9 673 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 BACH1O14867 736 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 LMOD1P29536 600 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 RNF144AP50876 292 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 GDF10P55107 478 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 GNASQ5JWF2 1037 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 ZNF385CQ66K41 422 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 LARP1Q6PKG0 1096 aaKnown RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 PRICKLE2Q7Z3G6 844 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 PLEKHM2Q8IWE5 1019 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 RNF217Q8TC41 542 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 UCN2Q96RP3 112 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 ZSCAN10Q96SZ4 725 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 ESYT1Q9BSJ8 1104 aa4.3□□□□□ -1.72
HMGB1-208ENST00000490788 MKRN1Q9UHC7 482 aaKnown RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 MAFBQ9Y5Q3 323 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-208ENST00000490788 SLC35F4A4IF30 521 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 ARHGEF15O94989 841 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 INHAP05111 366 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 RASA1P20936 1047 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 CENPCQ03188 943 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 TLR1Q15399 786 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 PLA2G4EQ3MJ16 856 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 SVOPQ8N4V2 548 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 CCDC155Q8N6L0 562 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 KDF1Q8NAX2 398 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-208ENST00000490788 GALNT6Q8NCL4 622 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 SCARF2Q96GP6 870 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-208ENST00000490788 VRTNQ9H8Y1 702 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 DNAAF2Q9NVR5 837 aaKnown RBP4.29□□□□□ -1.72
HMGB1-208ENST00000490788 SERPINA10Q9UK55 444 aa4.29□□□□□ -1.72
HMGB1-208ENST00000490788 ARID3CA6NKF2 412 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 IL2RAP01589 272 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 PROCP04070 461 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 RFX1P22670 979 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 FOXD4L5Q5VV16 416 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-208ENST00000490788 SV2AQ7L0J3 742 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 TAS1R3Q7RTX0 852 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 OGFOD1Q8N543 542 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 NBPF15Q8N660 670 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 TPCN2Q8NHX9 752 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 XAGE2Q96GT9 111 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 ZNF594Q96JF6 807 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-208ENST00000490788 KRTAP9-8Q9BYQ0 159 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 ETNK1Q9HBU6 452 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 SERTAD1Q9UHV2 236 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 CHMP3Q9Y3E7 222 aa4.28□□□□□ -1.72
HMGB1-208ENST00000490788 WASLO00401 505 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-208ENST00000490788 COBLO75128 1261 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 RHOQP17081 205 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 ITGA6P23229 1130 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 MARSP56192 900 aaKnown RBP4.27□□□□□ -1.73
HMGB1-208ENST00000490788 POU4F2Q12837 409 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 RNFT1Q5M7Z0 435 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 CCDC102BQ68D86 513 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 LARGE2Q8N3Y3 721 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 TIMMDC1Q9NPL8 285 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 PCDHGA11Q9Y5H2 935 aa4.27□□□□□ -1.73
HMGB1-208ENST00000490788 STAU1O95793 577 aaKnown RBP4.26□□□□□ -1.73
HMGB1-208ENST00000490788 CSB-PGBD3P0DP91 1061 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 SCNN1DP51172 638 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 SMTNP53814 917 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 NBPF10Q6P3W6 841 aaKnown RBP4.26□□□□□ -1.73
HMGB1-208ENST00000490788 FOXR1Q6PIV2 292 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 RIPOR1Q6ZS17 1223 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 PGBD3Q8N328 593 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 VWA5B2Q8N398 1253 aa4.26□□□□□ -1.73
HMGB1-208ENST00000490788 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.26□□□□□ -1.73
HMGB1-208ENST00000490788 RHBDD1Q8TEB9 315 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms