RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ADAMTS8Q9UP79 889 aa6.82□□□□□ -1.32
PTCD3-216ENST00000487043 GDF11O95390 407 aa6.81□□□□□ -1.32
PTCD3-216ENST00000487043 RASA1P20936 1047 aa6.81□□□□□ -1.32
PTCD3-216ENST00000487043 CTSOP43234 321 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-216ENST00000487043 RAB15P59190 212 aa6.81□□□□□ -1.32
PTCD3-216ENST00000487043 MCCD1P59942 119 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-216ENST00000487043 CRTC2Q53ET0 693 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-216ENST00000487043 INTS6LQ5JSJ4 861 aaKnown RBP6.81□□□□□ -1.32
PTCD3-216ENST00000487043 B4GALNT3Q6L9W6 998 aa6.81□□□□□ -1.32
PTCD3-216ENST00000487043 VWA5B2Q8N398 1253 aa6.81□□□□□ -1.32
PTCD3-216ENST00000487043 SVOPQ8N4V2 548 aa6.81□□□□□ -1.32
PTCD3-216ENST00000487043 NANOS1Q8WY41 292 aaKnown RBP6.81□□□□□ -1.32
PTCD3-216ENST00000487043 INSM2Q96T92 566 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-216ENST00000487043 SLC35F4A4IF30 521 aa6.8□□□□□ -1.32
PTCD3-216ENST00000487043 FAM196BA6NMK8 535 aa6.8□□□□□ -1.32
PTCD3-216ENST00000487043 ITGA6P23229 1130 aa6.8□□□□□ -1.32
PTCD3-216ENST00000487043 RASSF7Q02833 373 aa6.8□□□□□ -1.32
PTCD3-216ENST00000487043 SV2AQ7L0J3 742 aa6.8□□□□□ -1.32
PTCD3-216ENST00000487043 PHTF2Q8N3S3 785 aa6.8□□□□□ -1.32
PTCD3-216ENST00000487043 ZNF395Q9H8N7 513 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-216ENST00000487043 ATP5J2-PTCD1G3V325 749 aa6.79□□□□□ -1.32
PTCD3-216ENST00000487043 CCDC27Q2M243 656 aa6.79□□□□□ -1.32
PTCD3-216ENST00000487043 EML3Q32P44 896 aa6.79□□□□□ -1.32
PTCD3-216ENST00000487043 TSGA10IPQ3SY00 556 aa6.79□□□□□ -1.32
PTCD3-216ENST00000487043 RNFT1Q5M7Z0 435 aa6.79□□□□□ -1.32
PTCD3-216ENST00000487043 SND1Q7KZF4 910 aaKnown RBP eCLIP6.79□□□□□ -1.32
PTCD3-216ENST00000487043 DZIP3Q86Y13 1208 aaKnown RBP6.79□□□□□ -1.32
PTCD3-216ENST00000487043 FAM200AQ8TCP9 573 aa6.79□□□□□ -1.32
PTCD3-216ENST00000487043 GSK3AP49840 483 aa6.78□□□□□ -1.32
PTCD3-216ENST00000487043 PTK7Q13308 1070 aa6.78□□□□□ -1.32
PTCD3-216ENST00000487043 NBPF20Q3BBV1 942 aa6.78□□□□□ -1.32
PTCD3-216ENST00000487043 ZNF385CQ66K41 422 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-216ENST00000487043 TMPRSS4Q9NRS4 437 aa6.78□□□□□ -1.32
PTCD3-216ENST00000487043 LZTS3O60299 673 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-216ENST00000487043 RBM25P49756 843 aaKnown RBP6.77□□□□□ -1.33
PTCD3-216ENST00000487043 SUZ12Q15022 739 aaKnown RBP6.77□□□□□ -1.33
PTCD3-216ENST00000487043 MAP7D1Q3KQU3 841 aa6.77□□□□□ -1.33
PTCD3-216ENST00000487043 ANKMY2Q8IV38 441 aa6.77□□□□□ -1.33
PTCD3-216ENST00000487043 OGFOD1Q8N543 542 aa6.77□□□□□ -1.33
PTCD3-216ENST00000487043 CCER1Q8TC90 406 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-216ENST00000487043 ZNF428Q96B54 188 aa6.77□□□□□ -1.33
PTCD3-216ENST00000487043 MARSP56192 900 aaKnown RBP6.76□□□□□ -1.33
PTCD3-216ENST00000487043 OXLD1Q5BKU9 147 aa6.76□□□□□ -1.33
PTCD3-216ENST00000487043 PHLDB3Q6NSJ2 640 aa6.76□□□□□ -1.33
PTCD3-216ENST00000487043 ZNF784Q8NCA9 323 aaPredicted RBP6.76□□□□□ -1.33
PTCD3-216ENST00000487043 RNF217Q8TC41 542 aa6.76□□□□□ -1.33
PTCD3-216ENST00000487043 WHAMMQ8TF30 809 aa6.76□□□□□ -1.33
PTCD3-216ENST00000487043 ZNF594Q96JF6 807 aaPredicted RBP6.76□□□□□ -1.33
PTCD3-216ENST00000487043 CDCA7Q9BWT1 371 aaPredicted RBP6.76□□□□□ -1.33
PTCD3-216ENST00000487043 DOLKQ9UPQ8 538 aa6.76□□□□□ -1.33
PTCD3-216ENST00000487043 GNEQ9Y223 722 aaKnown RBP6.76□□□□□ -1.33
PTCD3-216ENST00000487043 LOC100996750A0A140TA64 210 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 ADH1AP07327 375 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 CLDN10P78369 228 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 DPYDQ12882 1025 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 TRIM50Q86XT4 487 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 CCDC85AQ96PX6 553 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-216ENST00000487043 KRTAP4-6Q9BYQ5 205 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 DNAAF2Q9NVR5 837 aaKnown RBP6.75□□□□□ -1.33
PTCD3-216ENST00000487043 SLAIN2Q9P270 581 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 CHIC2Q9UKJ5 165 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 NOD1Q9Y239 953 aa6.75□□□□□ -1.33
PTCD3-216ENST00000487043 ERVH48-1M5A8F1 160 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 GIGYF1O75420 1035 aaPredicted RBP6.74□□□□□ -1.33
PTCD3-216ENST00000487043 SLURP2P0DP57 97 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 SSFA2P28290 1259 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 IRS1P35568 1242 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 ATP1A2P50993 1020 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 FAM69CQ0P6D2 419 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 TXNDC2Q86VQ3 553 aa6.74□□□□□ -1.33
PTCD3-216ENST00000487043 ESPNB1AK53 854 aa6.73□□□□□ -1.33
PTCD3-216ENST00000487043 ATP2B4P23634 1241 aa6.73□□□□□ -1.33
PTCD3-216ENST00000487043 ARID4AP29374 1257 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-216ENST00000487043 PTGIRP43119 386 aa6.73□□□□□ -1.33
PTCD3-216ENST00000487043 LYSMD3Q7Z3D4 306 aa6.73□□□□□ -1.33
PTCD3-216ENST00000487043 CLP1Q92989 425 aaKnown RBP6.73□□□□□ -1.33
PTCD3-216ENST00000487043 SENP3-EIF4A1A0A087X0R7 540 aa6.72□□□□□ -1.33
PTCD3-216ENST00000487043 ADAMTS2O95450 1211 aa6.72□□□□□ -1.33
PTCD3-216ENST00000487043 ADD1P35611 737 aaKnown RBP6.72□□□□□ -1.33
PTCD3-216ENST00000487043 MAP3K10Q02779 954 aa6.72□□□□□ -1.33
PTCD3-216ENST00000487043 GPAT2Q6NUI2 795 aa6.72□□□□□ -1.33
PTCD3-216ENST00000487043 CYLDQ9NQC7 956 aa6.72□□□□□ -1.33
PTCD3-216ENST00000487043 KIAA1024Q9UPX6 916 aa6.72□□□□□ -1.33
PTCD3-216ENST00000487043 ZBTB7BO15156 539 aaPredicted RBP6.71□□□□□ -1.34
PTCD3-216ENST00000487043 LILRA1O75019 489 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 ARHGEF15O94989 841 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 GTF2IP78347 998 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 RNF20Q5VTR2 975 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 PRICKLE2Q7Z3G6 844 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 LARGE2Q8N3Y3 721 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 TRIM52Q96A61 297 aa6.71□□□□□ -1.34
PTCD3-216ENST00000487043 SCARF2Q96GP6 870 aaPredicted RBP6.71□□□□□ -1.34
PTCD3-216ENST00000487043 RBM19Q9Y4C8 960 aaKnown RBP6.71□□□□□ -1.34
PTCD3-216ENST00000487043 RHOQP17081 205 aa6.7□□□□□ -1.34
PTCD3-216ENST00000487043 SCNN1AP37088 669 aa6.7□□□□□ -1.34
PTCD3-216ENST00000487043 PSME1Q06323 249 aa6.7□□□□□ -1.34
PTCD3-216ENST00000487043 SWI5Q1ZZU3 235 aa6.7□□□□□ -1.34
PTCD3-216ENST00000487043 SIX5Q8N196 739 aa6.7□□□□□ -1.34
PTCD3-216ENST00000487043 KDF1Q8NAX2 398 aaPredicted RBP6.7□□□□□ -1.34
PTCD3-216ENST00000487043 PCDHB11Q9Y5F2 797 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms