RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 NBPF15Q8N660 670 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 GTPBP3Q969Y2 492 aaKnown RBP8.05□□□□□ -1.12
VPS13A-211ENST00000484581 OSBPL3Q9H4L5 887 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 ARHGEF10LQ9HCE6 1279 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 PRM3Q9NNZ6 103 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 TIMMDC1Q9NPL8 285 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 MBIPQ9NS73 344 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 GNRH1P01148 92 aa8.04□□□□□ -1.12
VPS13A-211ENST00000484581 CELA2BP08218 269 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-211ENST00000484581 WDR44Q5JSH3 913 aa8.04□□□□□ -1.12
VPS13A-211ENST00000484581 TAS1R3Q7RTX0 852 aa8.04□□□□□ -1.12
VPS13A-211ENST00000484581 CEP126Q9P2H0 1117 aa8.04□□□□□ -1.12
VPS13A-211ENST00000484581 GTF2E1P29083 439 aaPredicted RBP8.03□□□□□ -1.12
VPS13A-211ENST00000484581 IGF1RP08069 1367 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 SPATA31C2B4DYI2 1134 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 WASLO00401 505 aaPredicted RBP8.02□□□□□ -1.13
VPS13A-211ENST00000484581 MSTNO14793 375 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 F11P03951 625 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 PLA2G4EQ3MJ16 856 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 CNKSR1Q969H4 720 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 RAB6BQ9NRW1 208 aa8.02□□□□□ -1.13
VPS13A-211ENST00000484581 NSFL1CQ9UNZ2 370 aaKnown RBP8.02□□□□□ -1.13
VPS13A-211ENST00000484581 CENPCQ03188 943 aa8.01□□□□□ -1.13
VPS13A-211ENST00000484581 ESYT1Q9BSJ8 1104 aa8.01□□□□□ -1.13
VPS13A-211ENST00000484581 TRAIPQ9BWF2 469 aa8.01□□□□□ -1.13
VPS13A-211ENST00000484581 NUCKS1Q9H1E3 243 aaKnown RBP8.01□□□□□ -1.13
VPS13A-211ENST00000484581 GPR37L1O60883 481 aa8□□□□□ -1.13
VPS13A-211ENST00000484581 EIF4G2P78344 907 aaKnown RBP eCLIP8□□□□□ -1.13
VPS13A-211ENST00000484581 NEDD1Q8NHV4 660 aa8□□□□□ -1.13
VPS13A-211ENST00000484581 SPOCK3Q9BQ16 436 aa8□□□□□ -1.13
VPS13A-211ENST00000484581 ITGB2P05107 769 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 BCRP11274 1271 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 MX2P20592 715 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 USP4Q13107 963 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 ESCO1Q5FWF5 840 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 GNASQ5JWF2 1037 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 BEND7Q8N7W2 519 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-211ENST00000484581 DCAF5Q96JK2 942 aa7.99□□□□□ -1.13
VPS13A-211ENST00000484581 ZSCAN10Q96SZ4 725 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-211ENST00000484581 CDCA7Q9BWT1 371 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-211ENST00000484581 CCDC9Q9Y3X0 531 aaKnown RBP7.99□□□□□ -1.13
VPS13A-211ENST00000484581 PHF20L1A8MW92 1017 aa7.98□□□□□ -1.13
VPS13A-211ENST00000484581 IL2RAP01589 272 aa7.98□□□□□ -1.13
VPS13A-211ENST00000484581 PHKA2P46019 1235 aa7.98□□□□□ -1.13
VPS13A-211ENST00000484581 TMEM214Q6NUQ4 689 aaKnown RBP7.98□□□□□ -1.13
VPS13A-211ENST00000484581 NPM2Q86SE8 214 aaKnown RBP7.98□□□□□ -1.13
VPS13A-211ENST00000484581 XAGE2Q96GT9 111 aa7.98□□□□□ -1.13
VPS13A-211ENST00000484581 CCDC85AQ96PX6 553 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-211ENST00000484581 SLFNL1Q499Z3 407 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 PODNQ7Z5L7 613 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 WWC1Q8IX03 1113 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 ACDQ96AP0 544 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 KRTAP4-8Q9BYQ9 185 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 GPAMQ9HCL2 828 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 DOLKQ9UPQ8 538 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 TBC1D2BQ9UPU7 963 aa7.97□□□□□ -1.13
VPS13A-211ENST00000484581 A0A1B0GTH6 734 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 PROCP04070 461 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 CSB-PGBD3P0DP91 1061 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 PGBD3Q8N328 593 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 SIRT1Q96EB6 747 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 CFHR5Q9BXR6 569 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 PHF24Q9UPV7 400 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 CNTNAP5Q8WYK1 1306 aa7.96□□□□□ -1.14
VPS13A-211ENST00000484581 MAP2K3P46734 347 aa7.95□□□□□ -1.14
VPS13A-211ENST00000484581 RNF135Q8IUD6 432 aa7.95□□□□□ -1.14
VPS13A-211ENST00000484581 TSGA10IPQ3SY00 556 aa7.94□□□□□ -1.14
VPS13A-211ENST00000484581 GDPD2Q9HCC8 539 aa7.94□□□□□ -1.14
VPS13A-211ENST00000484581 LRRC4BQ9NT99 713 aa7.94□□□□□ -1.14
VPS13A-211ENST00000484581 OXLD1Q5BKU9 147 aa7.93□□□□□ -1.14
VPS13A-211ENST00000484581 PHTF2Q8N3S3 785 aa7.93□□□□□ -1.14
VPS13A-211ENST00000484581 HRH3Q9Y5N1 445 aa7.93□□□□□ -1.14
VPS13A-211ENST00000484581 PPP1R15AO75807 674 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-211ENST00000484581 LBRQ14739 615 aaKnown RBP7.92□□□□□ -1.14
VPS13A-211ENST00000484581 C4orf17Q53FE4 359 aa7.92□□□□□ -1.14
VPS13A-211ENST00000484581 EFHC2Q5JST6 749 aa7.92□□□□□ -1.14
VPS13A-211ENST00000484581 GALNT6Q8NCL4 622 aa7.92□□□□□ -1.14
VPS13A-211ENST00000484581 OXCT2Q9BYC2 517 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-211ENST00000484581 FHDC1Q9C0D6 1143 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-211ENST00000484581 OIP5O43482 229 aa7.91□□□□□ -1.14
VPS13A-211ENST00000484581 MSX1P28360 303 aa7.91□□□□□ -1.14
VPS13A-211ENST00000484581 VAC14Q08AM6 782 aa7.91□□□□□ -1.14
VPS13A-211ENST00000484581 IRF5Q13568 498 aa7.91□□□□□ -1.14
VPS13A-211ENST00000484581 RETREG2Q8NC44 543 aa7.91□□□□□ -1.14
VPS13A-211ENST00000484581 RUBCNLQ9H714 662 aa7.91□□□□□ -1.14
VPS13A-211ENST00000484581 ABL2P42684 1182 aa7.9□□□□□ -1.14
VPS13A-211ENST00000484581 TLR1Q15399 786 aa7.9□□□□□ -1.14
VPS13A-211ENST00000484581 PPARGC1BQ86YN6 1023 aaKnown RBP7.9□□□□□ -1.14
VPS13A-211ENST00000484581 RHBDD1Q8TEB9 315 aa7.9□□□□□ -1.14
VPS13A-211ENST00000484581 KLRG1Q96E93 195 aa7.9□□□□□ -1.14
VPS13A-211ENST00000484581 ETNK1Q9HBU6 452 aa7.9□□□□□ -1.14
VPS13A-211ENST00000484581 K7ELQ4 463 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-211ENST00000484581 WASHC4Q2M389 1173 aa7.89□□□□□ -1.15
VPS13A-211ENST00000484581 GLMNQ92990 594 aa7.89□□□□□ -1.15
VPS13A-211ENST00000484581 CALR3Q96L12 384 aaKnown RBP7.89□□□□□ -1.15
VPS13A-211ENST00000484581 THBS1P07996 1170 aa7.88□□□□□ -1.15
VPS13A-211ENST00000484581 BMP4P12644 408 aa7.88□□□□□ -1.15
VPS13A-211ENST00000484581 SEMA3FQ13275 785 aa7.88□□□□□ -1.15
VPS13A-211ENST00000484581 MAP7D1Q3KQU3 841 aa7.88□□□□□ -1.15
VPS13A-211ENST00000484581 TBC1D9Q6ZT07 1266 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms