RNA–Protein interactions for RNA: ENST00000473782.1

HPS4-210, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-210ENST00000473782 ASAP1Q9ULH1 1129 aa22.93■■□□□ 1.26
HPS4-210ENST00000473782 GGNBP2Q9H3C7 697 aa22.92■■□□□ 1.26
HPS4-210ENST00000473782 FSTL1Q12841 308 aa22.91■■□□□ 1.26
HPS4-210ENST00000473782 C9orf131Q5VYM1 1079 aa22.91■■□□□ 1.26
HPS4-210ENST00000473782 TNS4Q8IZW8 715 aa22.91■■□□□ 1.26
HPS4-210ENST00000473782 PKD1L3Q7Z443 1732 aa22.91■■□□□ 1.26
HPS4-210ENST00000473782 SMG6Q86US8 1419 aaKnown RBP22.91■■□□□ 1.26
HPS4-210ENST00000473782 NCAPD2Q15021 1401 aa22.9■■□□□ 1.26
HPS4-210ENST00000473782 BRCA1P38398 1863 aaKnown RBP22.88■■□□□ 1.25
HPS4-210ENST00000473782 FCHSD2O94868 740 aa22.88■■□□□ 1.25
HPS4-210ENST00000473782 ATP6V1AP38606 617 aa22.88■■□□□ 1.25
HPS4-210ENST00000473782 SLC4A9Q96Q91 983 aa22.88■■□□□ 1.25
HPS4-210ENST00000473782 KCPQ6ZWJ8 1503 aa22.87■■□□□ 1.25
HPS4-210ENST00000473782 ATG3Q9NT62 314 aa22.87■■□□□ 1.25
HPS4-210ENST00000473782 FLT4P35916 1363 aa22.87■■□□□ 1.25
HPS4-210ENST00000473782 GYS1P13807 737 aa22.85■■□□□ 1.25
HPS4-210ENST00000473782 TMF1P82094 1093 aa22.85■■□□□ 1.25
HPS4-210ENST00000473782 NLGN1Q8N2Q7 840 aa22.85■■□□□ 1.25
HPS4-210ENST00000473782 KDRP35968 1356 aa22.85■■□□□ 1.25
HPS4-210ENST00000473782 TRAPPC3LQ5T215 181 aa22.84■■□□□ 1.25
HPS4-210ENST00000473782 ARHGEF1Q92888 912 aaKnown RBP22.84■■□□□ 1.25
HPS4-210ENST00000473782 RRAGCQ9HB90 399 aa22.84■■□□□ 1.25
HPS4-210ENST00000473782 KIF24Q5T7B8 1368 aa22.84■■□□□ 1.25
HPS4-210ENST00000473782 PLEKHG2Q9H7P9 1386 aa22.84■■□□□ 1.25
HPS4-210ENST00000473782 ST20-MTHFSA0A0A6YYL1 179 aa22.83■■□□□ 1.25
HPS4-210ENST00000473782 C16orf71Q8IYS4 520 aaPredicted RBP22.83■■□□□ 1.25
HPS4-210ENST00000473782 DCAF5Q96JK2 942 aa22.83■■□□□ 1.25
HPS4-210ENST00000473782 TMOD3Q9NYL9 352 aa22.83■■□□□ 1.25
HPS4-210ENST00000473782 C4AP0C0L4 1744 aa22.82■■□□□ 1.24
HPS4-210ENST00000473782 CCDC87Q9NVE4 849 aa22.82■■□□□ 1.24
HPS4-210ENST00000473782 RTCBQ9Y3I0 505 aaKnown RBP22.81■■□□□ 1.24
HPS4-210ENST00000473782 EMILIN1Q9Y6C2 1016 aa22.81■■□□□ 1.24
HPS4-210ENST00000473782 ARFGEF1Q9Y6D6 1849 aa22.8■■□□□ 1.24
HPS4-210ENST00000473782 SPG7Q9UQ90 795 aa22.8■■□□□ 1.24
HPS4-210ENST00000473782 TONSLQ96HA7 1378 aa22.79■■□□□ 1.24
HPS4-210ENST00000473782 PHKG2P15735 406 aa22.79■■□□□ 1.24
HPS4-210ENST00000473782 RC3H1Q5TC82 1133 aaKnown RBP22.79■■□□□ 1.24
HPS4-210ENST00000473782 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.79■■□□□ 1.241e-9■□□□□ 11
HPS4-210ENST00000473782 RNF181Q9P0P0 153 aa22.79■■□□□ 1.24
HPS4-210ENST00000473782 KDM2BQ8NHM5 1336 aa22.79■■□□□ 1.24
HPS4-210ENST00000473782 PIM2Q9P1W9 311 aa22.78■■□□□ 1.24
HPS4-210ENST00000473782 HSPA1AP0DMV8 641 aaKnown RBP22.77■■□□□ 1.24
HPS4-210ENST00000473782 HSPA1BP0DMV9 641 aaKnown RBP22.77■■□□□ 1.24
HPS4-210ENST00000473782 ADRA2BP18089 450 aa22.77■■□□□ 1.24
HPS4-210ENST00000473782 EYA1Q99502 592 aa22.77■■□□□ 1.24
HPS4-210ENST00000473782 RPS6KA4O75676 772 aa22.76■■□□□ 1.23
HPS4-210ENST00000473782 SMC1BQ8NDV3 1235 aa22.76■■□□□ 1.23
HPS4-210ENST00000473782 PARP3Q9Y6F1 533 aa22.76■■□□□ 1.23
HPS4-210ENST00000473782 IFNL2Q8IZJ0 200 aa22.75■■□□□ 1.23
HPS4-210ENST00000473782 CNTNAP4Q9C0A0 1308 aa22.75■■□□□ 1.23
HPS4-210ENST00000473782 DDR1Q08345 913 aa22.74■■□□□ 1.23
HPS4-210ENST00000473782 DALRD3Q5D0E6 543 aaKnown RBP22.74■■□□□ 1.23
HPS4-210ENST00000473782 ZNF831Q5JPB2 1677 aa22.74■■□□□ 1.23
HPS4-210ENST00000473782 SBF1O95248 1867 aa22.73■■□□□ 1.23
HPS4-210ENST00000473782 CHRNA5P30532 468 aa22.73■■□□□ 1.23
HPS4-210ENST00000473782 CARD14Q9BXL6 1004 aa22.73■■□□□ 1.23
HPS4-210ENST00000473782 TNRC6CQ9HCJ0 1690 aaKnown RBP22.73■■□□□ 1.23
HPS4-210ENST00000473782 COL5A3P25940 1745 aaPredicted RBP22.73■■□□□ 1.23
HPS4-210ENST00000473782 MYH14Q7Z406 1995 aaKnown RBP22.72■■□□□ 1.23
HPS4-210ENST00000473782 RFC4P35249 363 aa22.72■■□□□ 1.23
HPS4-210ENST00000473782 FKBP8Q14318 412 aa22.71■■□□□ 1.23
HPS4-210ENST00000473782 SRP68Q9UHB9 627 aaKnown RBP22.71■■□□□ 1.23
HPS4-210ENST00000473782 WASHC2AQ641Q2 1341 aa22.71■■□□□ 1.23
HPS4-210ENST00000473782 KDM6AO15550 1401 aaPredicted RBP22.71■■□□□ 1.23
HPS4-210ENST00000473782 RBM42Q9BTD8 480 aaKnown RBP22.7■■□□□ 1.22
HPS4-210ENST00000473782 RASSF7Q02833 373 aa22.69■■□□□ 1.22
HPS4-210ENST00000473782 KIF20BQ96Q89 1820 aa22.68■■□□□ 1.22
HPS4-210ENST00000473782 ANKRD26Q9UPS8 1709 aa22.68■■□□□ 1.22
HPS4-210ENST00000473782 POTECB2RU33 542 aa22.67■■□□□ 1.22
HPS4-210ENST00000473782 ERVV-2B6SEH9 535 aa22.67■■□□□ 1.22
HPS4-210ENST00000473782 USP42Q9H9J4 1324 aaKnown RBP22.66■■□□□ 1.22
HPS4-210ENST00000473782 PPM1GO15355 546 aaPredicted RBP22.66■■□□□ 1.22
HPS4-210ENST00000473782 SLC24A1O60721 1099 aa22.66■■□□□ 1.22
HPS4-210ENST00000473782 TM4SF1P30408 202 aa22.66■■□□□ 1.22
HPS4-210ENST00000473782 ZC3H4Q9UPT8 1303 aaKnown RBP22.65■■□□□ 1.22
HPS4-210ENST00000473782 GLTPD2A6NH11 291 aa22.65■■□□□ 1.22
HPS4-210ENST00000473782 POLRMTO00411 1230 aaKnown RBP22.65■■□□□ 1.22
HPS4-210ENST00000473782 VEGFAP15692 232 aaPredicted RBP22.64■■□□□ 1.21
HPS4-210ENST00000473782 ADAMTS7Q9UKP4 1686 aa22.63■■□□□ 1.21
HPS4-210ENST00000473782 CRKLP46109 303 aaKnown RBP22.63■■□□□ 1.21
HPS4-210ENST00000473782 POLKQ9UBT6 870 aa22.63■■□□□ 1.21
HPS4-210ENST00000473782 EIF4A2Q14240 407 aaKnown RBP22.61■■□□□ 1.21
HPS4-210ENST00000473782 SLC34A2O95436 690 aa22.6■■□□□ 1.21
HPS4-210ENST00000473782 LMNB1P20700 586 aa22.6■■□□□ 1.21
HPS4-210ENST00000473782 INTS5Q6P9B9 1019 aaKnown RBP22.6■■□□□ 1.21
HPS4-210ENST00000473782 PTCD1O75127 700 aaKnown RBP22.58■■□□□ 1.21
HPS4-210ENST00000473782 NFKBIEO00221 500 aa22.56■■□□□ 1.2
HPS4-210ENST00000473782 TJP1Q07157 1748 aa22.55■■□□□ 1.2
HPS4-210ENST00000473782 CABP4P57796 275 aa22.55■■□□□ 1.2
HPS4-210ENST00000473782 FOXN1O15353 648 aa22.54■■□□□ 1.2
HPS4-210ENST00000473782 HSP90AB1P08238 724 aaKnown RBP22.54■■□□□ 1.2
HPS4-210ENST00000473782 USPL1Q5W0Q7 1092 aa22.54■■□□□ 1.2
HPS4-210ENST00000473782 NFATC2IPQ8NCF5 419 aa22.53■■□□□ 1.2
HPS4-210ENST00000473782 NRXN2Q9P2S2 1712 aa22.52■■□□□ 1.2
HPS4-210ENST00000473782 NFIXQ14938 502 aa22.52■■□□□ 1.2
HPS4-210ENST00000473782 CREBZFQ9NS37 354 aa22.52■■□□□ 1.2
HPS4-210ENST00000473782 MKRN1Q9UHC7 482 aaKnown RBP22.52■■□□□ 1.2
HPS4-210ENST00000473782 BCL2L12Q9HB09 334 aa22.51■■□□□ 1.19
HPS4-210ENST00000473782 TIAM2Q8IVF5 1701 aa22.51■■□□□ 1.19
HPS4-210ENST00000473782 AFDNP55196 1824 aaKnown RBP22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms