RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 RAPGEF4Q8WZA2 1011 aa10.7□□□□□ -0.7
NPHP3-204ENST00000469232 KIF12Q96FN5 646 aa10.7□□□□□ -0.7
NPHP3-204ENST00000469232 CDCA7Q9BWT1 371 aaPredicted RBP10.7□□□□□ -0.7
NPHP3-204ENST00000469232 RRP7AQ9Y3A4 280 aaKnown RBP10.7□□□□□ -0.7
NPHP3-204ENST00000469232 E9PSI1 815 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 DUSP27Q5VZP5 1158 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 IFNLR1Q8IU57 520 aaPredicted RBP10.69□□□□□ -0.7
NPHP3-204ENST00000469232 STRN4Q9NRL3 753 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 MRC1P22897 1456 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 GNAT3A8MTJ3 354 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 ONECUT3O60422 494 aaPredicted RBP10.69□□□□□ -0.7
NPHP3-204ENST00000469232 CALD1Q05682 793 aaKnown RBP10.69□□□□□ -0.7
NPHP3-204ENST00000469232 NGLY1Q96IV0 654 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 BABAM1Q9NWV8 329 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 SPG7Q9UQ90 795 aa10.69□□□□□ -0.7
NPHP3-204ENST00000469232 THSD7AQ9UPZ6 1657 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 CYP27B1O15528 508 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 CENPBP07199 599 aaPredicted RBP10.68□□□□□ -0.7
NPHP3-204ENST00000469232 IL17REQ8NFR9 667 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 CDCA7LQ96GN5 454 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 C8orf37Q96NL8 207 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 IFT57Q9NWB7 429 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 TNS2Q63HR2 1409 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 GLI3P10071 1580 aa10.68□□□□□ -0.7
NPHP3-204ENST00000469232 SIPA1L3O60292 1781 aaPredicted RBP10.67□□□□□ -0.7
NPHP3-204ENST00000469232 KDM6AO15550 1401 aaPredicted RBP10.67□□□□□ -0.7
NPHP3-204ENST00000469232 PHKG2P15735 406 aa10.67□□□□□ -0.7
NPHP3-204ENST00000469232 ZNF530Q6P9A1 599 aaPredicted RBP10.67□□□□□ -0.7
NPHP3-204ENST00000469232 ZCRB1Q8TBF4 217 aaKnown RBP10.67□□□□□ -0.7
NPHP3-204ENST00000469232 SCN11AQ9UI33 1791 aa10.67□□□□□ -0.7
NPHP3-204ENST00000469232 AFF2P51816 1311 aa10.67□□□□□ -0.7
NPHP3-204ENST00000469232 CHL1O00533 1208 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 NEUROD2Q15784 382 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 IFNL2Q8IZJ0 200 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 CFAP44Q96MT7 982 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 USP21Q9UK80 565 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 PCDH11XQ9BZA7 1347 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 PCDH11YQ9BZA8 1340 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 MAP3K13O43283 966 aa10.66□□□□□ -0.7
NPHP3-204ENST00000469232 HSP90AB1P08238 724 aaKnown RBP10.66□□□□□ -0.7
NPHP3-204ENST00000469232 SALL2Q9Y467 1007 aaPredicted RBP10.66□□□□□ -0.7
NPHP3-204ENST00000469232 BCL9O00512 1426 aa10.65□□□□□ -0.7
NPHP3-204ENST00000469232 SENP3-EIF4A1A0A087X0R7 540 aa10.65□□□□□ -0.7
NPHP3-204ENST00000469232 RNMTO43148 476 aaKnown RBP10.65□□□□□ -0.7
NPHP3-204ENST00000469232 GNAI1P63096 354 aa10.65□□□□□ -0.7
NPHP3-204ENST00000469232 DCAF8Q5TAQ9 597 aa10.65□□□□□ -0.7
NPHP3-204ENST00000469232 VIRMAQ69YN4 1812 aaKnown RBP10.65□□□□□ -0.71
NPHP3-204ENST00000469232 CT47B1P0C2W7 299 aaPredicted RBP10.64□□□□□ -0.71
NPHP3-204ENST00000469232 DCAF5Q96JK2 942 aa10.64□□□□□ -0.71
NPHP3-204ENST00000469232 THUMPD2Q9BTF0 503 aaKnown RBP10.64□□□□□ -0.71
NPHP3-204ENST00000469232 MYH16Q9H6N6 1097 aa10.64□□□□□ -0.71
NPHP3-204ENST00000469232 TRPC5Q9UL62 973 aaPredicted RBP10.64□□□□□ -0.71
NPHP3-204ENST00000469232 RNF123Q5XPI4 1314 aa10.64□□□□□ -0.71
NPHP3-204ENST00000469232 DCTN1Q14203 1278 aa10.63□□□□□ -0.71
NPHP3-204ENST00000469232 C1orf141Q5JVX7 400 aa10.63□□□□□ -0.71
NPHP3-204ENST00000469232 MCM10Q7L590 875 aa10.63□□□□□ -0.71
NPHP3-204ENST00000469232 RTF1Q92541 710 aaKnown RBP10.63□□□□□ -0.71
NPHP3-204ENST00000469232 GJD4Q96KN9 370 aaPredicted RBP10.63□□□□□ -0.71
NPHP3-204ENST00000469232 LGR6Q9HBX8 967 aa10.63□□□□□ -0.71
NPHP3-204ENST00000469232 FANCIQ9NVI1 1328 aa10.63□□□□□ -0.71
NPHP3-204ENST00000469232 KDM3BQ7LBC6 1761 aa10.63□□□□□ -0.71
NPHP3-204ENST00000469232 ERVV-2B6SEH9 535 aa10.62□□□□□ -0.71
NPHP3-204ENST00000469232 TAF7Q15545 349 aaPredicted RBP10.62□□□□□ -0.71
NPHP3-204ENST00000469232 MEX3CQ5U5Q3 659 aaKnown RBP10.62□□□□□ -0.71
NPHP3-204ENST00000469232 HEG1Q9ULI3 1381 aa10.62□□□□□ -0.71
NPHP3-204ENST00000469232 TOGARAM1Q9Y4F4 1720 aa10.62□□□□□ -0.71
NPHP3-204ENST00000469232 EXOC5O00471 708 aa10.61□□□□□ -0.71
NPHP3-204ENST00000469232 MPRIPQ6WCQ1 1025 aa10.61□□□□□ -0.71
NPHP3-204ENST00000469232 SPOCK2Q92563 424 aa10.61□□□□□ -0.71
NPHP3-204ENST00000469232 MBIPQ9NS73 344 aa10.61□□□□□ -0.71
NPHP3-204ENST00000469232 SOS1Q07889 1333 aaPredicted RBP10.61□□□□□ -0.71
NPHP3-204ENST00000469232 PAPPAQ13219 1627 aa10.61□□□□□ -0.71
NPHP3-204ENST00000469232 ZNF772Q68DY9 489 aaPredicted RBP10.6□□□□□ -0.71
NPHP3-204ENST00000469232 ZNF428Q96B54 188 aa10.6□□□□□ -0.71
NPHP3-204ENST00000469232 SLC52A2Q9HAB3 445 aa10.6□□□□□ -0.71
NPHP3-204ENST00000469232 USP35Q9P2H5 1018 aa10.6□□□□□ -0.71
NPHP3-204ENST00000469232 BRPF1P55201 1214 aaPredicted RBP10.59□□□□□ -0.71
NPHP3-204ENST00000469232 DDB1Q16531 1140 aa10.59□□□□□ -0.71
NPHP3-204ENST00000469232 QTRT2Q9H974 415 aaKnown RBP10.59□□□□□ -0.71
NPHP3-204ENST00000469232 FAM98CQ17RN3 349 aaKnown RBP10.58□□□□□ -0.72
NPHP3-204ENST00000469232 MARCH10Q8NA82 808 aaPredicted RBP10.58□□□□□ -0.72
NPHP3-204ENST00000469232 TSR2Q969E8 191 aaKnown RBP10.58□□□□□ -0.72
NPHP3-204ENST00000469232 SGIP1Q9BQI5 828 aa10.58□□□□□ -0.72
NPHP3-204ENST00000469232 RGS17Q9UGC6 210 aaPredicted RBP10.58□□□□□ -0.72
NPHP3-204ENST00000469232 TRPC6Q9Y210 931 aa10.58□□□□□ -0.72
NPHP3-204ENST00000469232 PCDHB13Q9Y5F0 798 aa10.58□□□□□ -0.72
NPHP3-204ENST00000469232 UBR2Q8IWV8 1755 aa10.58□□□□□ -0.72
NPHP3-204ENST00000469232 HOXB7P09629 217 aa10.58□□□□□ -0.72
NPHP3-204ENST00000469232 EXOSC9Q06265 439 aaKnown RBP10.58□□□□□ -0.72
NPHP3-204ENST00000469232 GSE1Q14687 1217 aa10.58□□□□□ -0.72
NPHP3-204ENST00000469232 VAMP4O75379 141 aa10.57□□□□□ -0.72
NPHP3-204ENST00000469232 PYGBP11216 843 aa10.57□□□□□ -0.72
NPHP3-204ENST00000469232 EIF4A1P60842 406 aaKnown RBP10.57□□□□□ -0.72
NPHP3-204ENST00000469232 RBM6P78332 1123 aaKnown RBP10.57□□□□□ -0.72
NPHP3-204ENST00000469232 TEFQ10587 303 aa10.57□□□□□ -0.72
NPHP3-204ENST00000469232 ASTLQ6HA08 431 aaPredicted RBP10.57□□□□□ -0.72
NPHP3-204ENST00000469232 RCAN3Q9UKA8 241 aa10.57□□□□□ -0.72
NPHP3-204ENST00000469232 ITGB4P16144 1822 aa10.56□□□□□ -0.72
NPHP3-204ENST00000469232 ATMINO43313 823 aaPredicted RBP10.56□□□□□ -0.72
NPHP3-204ENST00000469232 C8orf58Q8NAV2 365 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms