RNA–Protein interactions for RNA: ENST00000467824.1

SYN3-209, Transcript of synapsin III, humanhuman

TSL 3

Gene SYN3, Length 523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-209ENST00000467824 MTHFSP49914 203 aa13.17□□□□□ -0.3
SYN3-209ENST00000467824 CABP4P57796 275 aa13.17□□□□□ -0.3
SYN3-209ENST00000467824 MSL1Q68DK7 614 aa13.17□□□□□ -0.3
SYN3-209ENST00000467824 LINC00116Q8NCU8 138 aa13.17□□□□□ -0.3
SYN3-209ENST00000467824 ATG3Q9NT62 314 aa13.17□□□□□ -0.3
SYN3-209ENST00000467824 COL24A1Q17RW2 1714 aa13.16□□□□□ -0.3
SYN3-209ENST00000467824 ITGB4P16144 1822 aa13.16□□□□□ -0.3
SYN3-209ENST00000467824 GNPATO15228 680 aa13.16□□□□□ -0.3
SYN3-209ENST00000467824 PER1O15534 1290 aaPredicted RBP13.16□□□□□ -0.3
SYN3-209ENST00000467824 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
SYN3-209ENST00000467824 NPC1L1Q9UHC9 1359 aa13.16□□□□□ -0.3
SYN3-209ENST00000467824 ITPK1Q13572 414 aa13.15□□□□□ -0.3
SYN3-209ENST00000467824 CC2D1BQ5T0F9 858 aaKnown RBP13.15□□□□□ -0.3
SYN3-209ENST00000467824 KDM6AO15550 1401 aaPredicted RBP13.14□□□□□ -0.31
SYN3-209ENST00000467824 NLGN2Q8NFZ4 835 aa13.14□□□□□ -0.31
SYN3-209ENST00000467824 RBM42Q9BTD8 480 aaKnown RBP13.14□□□□□ -0.31
SYN3-209ENST00000467824 CD2APQ9Y5K6 639 aa13.14□□□□□ -0.31
SYN3-209ENST00000467824 DIAPH1O60610 1272 aaKnown RBP13.13□□□□□ -0.31
SYN3-209ENST00000467824 AKAP4Q5JQC9 854 aa13.13□□□□□ -0.31
SYN3-209ENST00000467824 TAF1LQ8IZX4 1826 aa13.13□□□□□ -0.31
SYN3-209ENST00000467824 GRIN3BO60391 1043 aa13.12□□□□□ -0.31
SYN3-209ENST00000467824 ADRA2BP18089 450 aa13.12□□□□□ -0.31
SYN3-209ENST00000467824 AMIGO3Q86WK7 504 aa13.12□□□□□ -0.31
SYN3-209ENST00000467824 RTCBQ9Y3I0 505 aaKnown RBP13.12□□□□□ -0.31
SYN3-209ENST00000467824 CNTNAP4Q9C0A0 1308 aa13.12□□□□□ -0.31
SYN3-209ENST00000467824 SENP3-EIF4A1A0A087X0R7 540 aa13.11□□□□□ -0.31
SYN3-209ENST00000467824 RC3H1Q5TC82 1133 aaKnown RBP13.11□□□□□ -0.31
SYN3-209ENST00000467824 PTCD1O75127 700 aaKnown RBP13.1□□□□□ -0.31
SYN3-209ENST00000467824 HMOX1P09601 288 aa13.1□□□□□ -0.31
SYN3-209ENST00000467824 TRAPPC3LQ5T215 181 aa13.1□□□□□ -0.31
SYN3-209ENST00000467824 NFATC2IPQ8NCF5 419 aa13.1□□□□□ -0.31
SYN3-209ENST00000467824 UBR3Q6ZT12 1888 aa13.09□□□□□ -0.31
SYN3-209ENST00000467824 SMIM5Q71RC9 77 aa13.09□□□□□ -0.31
SYN3-209ENST00000467824 SLC4A9Q96Q91 983 aa13.09□□□□□ -0.31
SYN3-209ENST00000467824 ZNF831Q5JPB2 1677 aa13.08□□□□□ -0.31
SYN3-209ENST00000467824 RPS6KA4O75676 772 aa13.08□□□□□ -0.32
SYN3-209ENST00000467824 CNGB1Q14028 1251 aaPredicted RBP13.08□□□□□ -0.32
SYN3-209ENST00000467824 NLGN1Q8N2Q7 840 aa13.08□□□□□ -0.32
SYN3-209ENST00000467824 CFAP53Q96M91 514 aa13.08□□□□□ -0.32
SYN3-209ENST00000467824 SLC52A2Q9HAB3 445 aa13.08□□□□□ -0.32
SYN3-209ENST00000467824 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
SYN3-209ENST00000467824 MMP10P09238 476 aa13.07□□□□□ -0.32
SYN3-209ENST00000467824 YBX3P16989 372 aaKnown RBP eCLIP13.07□□□□□ -0.32
SYN3-209ENST00000467824 RFC4P35249 363 aa13.07□□□□□ -0.32
SYN3-209ENST00000467824 MRC1P22897 1456 aa13.06□□□□□ -0.32
SYN3-209ENST00000467824 RNMTO43148 476 aaKnown RBP13.06□□□□□ -0.32
SYN3-209ENST00000467824 CRKLP46109 303 aaKnown RBP13.06□□□□□ -0.32
SYN3-209ENST00000467824 C1QTNF8P60827 252 aa13.06□□□□□ -0.32
SYN3-209ENST00000467824 MTHFSDQ2M296 383 aaKnown RBP13.06□□□□□ -0.32
SYN3-209ENST00000467824 ARHGEF1Q92888 912 aaKnown RBP13.06□□□□□ -0.32
SYN3-209ENST00000467824 COL3A1P02461 1466 aaPredicted RBP13.05□□□□□ -0.32
SYN3-209ENST00000467824 GAS2L2Q8NHY3 880 aa13.05□□□□□ -0.32
SYN3-209ENST00000467824 LGR6Q9HBX8 967 aa13.05□□□□□ -0.32
SYN3-209ENST00000467824 GIGYF1O75420 1035 aaPredicted RBP13.04□□□□□ -0.32
SYN3-209ENST00000467824 NUDCQ9Y266 331 aa13.04□□□□□ -0.32
SYN3-209ENST00000467824 CEP350Q5VT06 3117 aa13.04□□□□□ -0.32
SYN3-209ENST00000467824 GYS1P13807 737 aa13.03□□□□□ -0.32
SYN3-209ENST00000467824 CCDC87Q9NVE4 849 aa13.03□□□□□ -0.32
SYN3-209ENST00000467824 PARP3Q9Y6F1 533 aa13.03□□□□□ -0.32
SYN3-209ENST00000467824 COL5A3P25940 1745 aaPredicted RBP13.02□□□□□ -0.32
SYN3-209ENST00000467824 GNAT3A8MTJ3 354 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 TGFB2P61812 414 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 TEFQ10587 303 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 TTC5Q8N0Z6 440 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 VSIG10Q8N0Z9 540 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 WWC3Q9ULE0 1092 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 CICQ96RK0 1608 aaPredicted RBP13.02□□□□□ -0.33
SYN3-209ENST00000467824 SCN11AQ9UI33 1791 aa13.02□□□□□ -0.33
SYN3-209ENST00000467824 SLC39A6Q13433 755 aa13.01□□□□□ -0.33
SYN3-209ENST00000467824 INTS5Q6P9B9 1019 aaKnown RBP13.01□□□□□ -0.33
SYN3-209ENST00000467824 DNAJC10Q8IXB1 793 aa13.01□□□□□ -0.33
SYN3-209ENST00000467824 USP42Q9H9J4 1324 aaKnown RBP13.01□□□□□ -0.33
SYN3-209ENST00000467824 C10orf71Q711Q0 1435 aa13.01□□□□□ -0.33
SYN3-209ENST00000467824 ZPR1O75312 459 aa13□□□□□ -0.33
SYN3-209ENST00000467824 CYP19A1P11511 503 aaPredicted RBP13□□□□□ -0.33
SYN3-209ENST00000467824 PXDNLA1KZ92 1463 aa12.99□□□□□ -0.33
SYN3-209ENST00000467824 ATP10DQ9P241 1426 aa12.99□□□□□ -0.33
SYN3-209ENST00000467824 SOS1Q07889 1333 aaPredicted RBP12.99□□□□□ -0.33
SYN3-209ENST00000467824 PPP2R1AP30153 589 aa12.99□□□□□ -0.33
SYN3-209ENST00000467824 PRKAR2BP31323 418 aa12.99□□□□□ -0.33
SYN3-209ENST00000467824 SRP68Q9UHB9 627 aaKnown RBP12.99□□□□□ -0.33
SYN3-209ENST00000467824 TJP1Q07157 1748 aa12.99□□□□□ -0.33
SYN3-209ENST00000467824 ADAMTS7Q9UKP4 1686 aa12.99□□□□□ -0.33
SYN3-209ENST00000467824 KCPQ6ZWJ8 1503 aa12.98□□□□□ -0.33
SYN3-209ENST00000467824 STARD3NLO95772 234 aa12.98□□□□□ -0.33
SYN3-209ENST00000467824 U2AF1L5P0DN76 240 aaPredicted RBP12.98□□□□□ -0.33
SYN3-209ENST00000467824 U2AF1Q01081 240 aaKnown RBP eCLIP12.98□□□□□ -0.33
SYN3-209ENST00000467824 ZNF526Q8TF50 670 aaPredicted RBP12.98□□□□□ -0.33
SYN3-209ENST00000467824 RSPH6AQ9H0K4 717 aa12.98□□□□□ -0.33
SYN3-209ENST00000467824 C4AP0C0L4 1744 aa12.97□□□□□ -0.33
SYN3-209ENST00000467824 FKBP8Q14318 412 aa12.97□□□□□ -0.33
SYN3-209ENST00000467824 ZNF790Q6PG37 636 aa12.97□□□□□ -0.33
SYN3-209ENST00000467824 IL17REQ8NFR9 667 aa12.97□□□□□ -0.33
SYN3-209ENST00000467824 TEX13AQ9BXU3 409 aaPredicted RBP12.97□□□□□ -0.33
SYN3-209ENST00000467824 COL15A1P39059 1388 aa12.96□□□□□ -0.33
SYN3-209ENST00000467824 CEMIPQ8WUJ3 1361 aa12.96□□□□□ -0.33
SYN3-209ENST00000467824 A0A0G2JLW4 131 aa12.96□□□□□ -0.33
SYN3-209ENST00000467824 FCHSD2O94868 740 aa12.96□□□□□ -0.33
SYN3-209ENST00000467824 USPL1Q5W0Q7 1092 aa12.96□□□□□ -0.33
SYN3-209ENST00000467824 RTF1Q92541 710 aaKnown RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms