RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 NRAPQ86VF7 1730 aa23.89■■□□□ 1.41
CAPN3-209ENST00000466222 EXOC5O00471 708 aa23.88■■□□□ 1.41
CAPN3-209ENST00000466222 SLC52A2Q9HAB3 445 aa23.88■■□□□ 1.41
CAPN3-209ENST00000466222 THRAP3Q9Y2W1 955 aaKnown RBP23.88■■□□□ 1.41
CAPN3-209ENST00000466222 SLC39A6Q13433 755 aa23.86■■□□□ 1.41
CAPN3-209ENST00000466222 FRAT1Q92837 279 aaPredicted RBP23.86■■□□□ 1.41
CAPN3-209ENST00000466222 LRRC37A3O60309 1634 aa23.86■■□□□ 1.41
CAPN3-209ENST00000466222 CT47B1P0C2W7 299 aaPredicted RBP23.86■■□□□ 1.41
CAPN3-209ENST00000466222 SMC4Q9NTJ3 1288 aa23.86■■□□□ 1.41
CAPN3-209ENST00000466222 HSP90AB1P08238 724 aaKnown RBP23.85■■□□□ 1.41
CAPN3-209ENST00000466222 NKX1-1Q15270 411 aaPredicted RBP23.85■■□□□ 1.41
CAPN3-209ENST00000466222 BARGINQ6ZT62 677 aa23.85■■□□□ 1.41
CAPN3-209ENST00000466222 TNNQ9UQP3 1299 aa23.84■■□□□ 1.41
CAPN3-209ENST00000466222 PKD1L3Q7Z443 1732 aa23.84■■□□□ 1.41
CAPN3-209ENST00000466222 CABP4P57796 275 aa23.84■■□□□ 1.41
CAPN3-209ENST00000466222 DDB1Q16531 1140 aa23.84■■□□□ 1.41
CAPN3-209ENST00000466222 EIF4A1P60842 406 aaKnown RBP23.83■■□□□ 1.41
CAPN3-209ENST00000466222 BABAM1Q9NWV8 329 aa23.82■■□□□ 1.4
CAPN3-209ENST00000466222 NECTIN2Q92692 538 aa23.82■■□□□ 1.4
CAPN3-209ENST00000466222 PARP4Q9UKK3 1724 aaKnown RBP23.82■■□□□ 1.4
CAPN3-209ENST00000466222 CDCA7Q9BWT1 371 aaPredicted RBP23.81■■□□□ 1.4
CAPN3-209ENST00000466222 NWD2Q9ULI1 1742 aa23.81■■□□□ 1.4
CAPN3-209ENST00000466222 MARCH10Q8NA82 808 aaPredicted RBP23.8■■□□□ 1.4
CAPN3-209ENST00000466222 A0A0G2JS52 829 aa23.8■■□□□ 1.4
CAPN3-209ENST00000466222 PRAMEF22A3QJZ6 481 aa23.8■■□□□ 1.4
CAPN3-209ENST00000466222 EXOC6Q8TAG9 804 aa23.8■■□□□ 1.4
CAPN3-209ENST00000466222 FBXO41Q8TF61 875 aa23.8■■□□□ 1.4
CAPN3-209ENST00000466222 GJD4Q96KN9 370 aaPredicted RBP23.8■■□□□ 1.4
CAPN3-209ENST00000466222 ZNF790Q6PG37 636 aa23.79■■□□□ 1.4
CAPN3-209ENST00000466222 NOB1Q9ULX3 412 aaKnown RBP23.79■■□□□ 1.4
CAPN3-209ENST00000466222 TNS2Q63HR2 1409 aa23.78■■□□□ 1.4
CAPN3-209ENST00000466222 ERVV-2B6SEH9 535 aa23.78■■□□□ 1.4
CAPN3-209ENST00000466222 CANXP27824 592 aaKnown RBP23.78■■□□□ 1.4
CAPN3-209ENST00000466222 ALDH1L2Q3SY69 923 aa23.78■■□□□ 1.4
CAPN3-209ENST00000466222 MRPL50Q8N5N7 158 aaKnown RBP23.78■■□□□ 1.4
CAPN3-209ENST00000466222 QTRT2Q9H974 415 aaKnown RBP23.78■■□□□ 1.4
CAPN3-209ENST00000466222 CLUAP1Q96AJ1 413 aa23.77■■□□□ 1.4
CAPN3-209ENST00000466222 ADAMTS7Q9UKP4 1686 aa23.77■■□□□ 1.4
CAPN3-209ENST00000466222 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.76■■□□□ 1.39
CAPN3-209ENST00000466222 PANK1Q8TE04 598 aa23.76■■□□□ 1.39
CAPN3-209ENST00000466222 TRPC5Q9UL62 973 aaPredicted RBP23.76■■□□□ 1.39
CAPN3-209ENST00000466222 SHANK3Q9BYB0 1731 aa23.75■■□□□ 1.39
CAPN3-209ENST00000466222 ANP32AP39687 249 aaKnown RBP23.75■■□□□ 1.39
CAPN3-209ENST00000466222 ZNF428Q96B54 188 aa23.75■■□□□ 1.39
CAPN3-209ENST00000466222 ZNF496Q96IT1 587 aaPredicted RBP23.75■■□□□ 1.39
CAPN3-209ENST00000466222 CRBNQ96SW2 442 aa23.75■■□□□ 1.39
CAPN3-209ENST00000466222 RLBP1P12271 317 aa23.74■■□□□ 1.39
CAPN3-209ENST00000466222 EIF2S2P20042 333 aaKnown RBP23.74■■□□□ 1.39
CAPN3-209ENST00000466222 PIGBQ92521 554 aa23.74■■□□□ 1.39
CAPN3-209ENST00000466222 SYTL4Q96C24 671 aaPredicted RBP23.74■■□□□ 1.39
CAPN3-209ENST00000466222 FAM182BQ5T319 152 aa23.74■■□□□ 1.39
CAPN3-209ENST00000466222 NOP58Q9Y2X3 529 aaKnown RBP23.74■■□□□ 1.39
CAPN3-209ENST00000466222 GIGYF1O75420 1035 aaPredicted RBP23.73■■□□□ 1.39
CAPN3-209ENST00000466222 MS4A1P11836 297 aa23.73■■□□□ 1.39
CAPN3-209ENST00000466222 ACSBG1Q96GR2 724 aa23.73■■□□□ 1.39
CAPN3-209ENST00000466222 MRC1P22897 1456 aa23.73■■□□□ 1.39
CAPN3-209ENST00000466222 ATRNO75882 1429 aa23.73■■□□□ 1.39
CAPN3-209ENST00000466222 TRIM27P14373 513 aa23.72■■□□□ 1.39
CAPN3-209ENST00000466222 PRIM1P49642 420 aaKnown RBP23.72■■□□□ 1.39
CAPN3-209ENST00000466222 TMOD3Q9NYL9 352 aa23.72■■□□□ 1.39
CAPN3-209ENST00000466222 SLC4A2P04920 1241 aa23.72■■□□□ 1.39
CAPN3-209ENST00000466222 HDGFL1Q5TGJ6 251 aa23.71■■□□□ 1.39
CAPN3-209ENST00000466222 ZKSCAN2Q63HK3 967 aa23.71■■□□□ 1.39
CAPN3-209ENST00000466222 TTC5Q8N0Z6 440 aa23.71■■□□□ 1.39
CAPN3-209ENST00000466222 HEG1Q9ULI3 1381 aa23.71■■□□□ 1.39
CAPN3-209ENST00000466222 G2E3Q7L622 706 aa23.71■■□□□ 1.39
CAPN3-209ENST00000466222 ASAP1Q9ULH1 1129 aa23.71■■□□□ 1.39
CAPN3-209ENST00000466222 PTCD1O75127 700 aaKnown RBP23.7■■□□□ 1.38
CAPN3-209ENST00000466222 GLI3P10071 1580 aa23.69■■□□□ 1.38
CAPN3-209ENST00000466222 BRPF1P55201 1214 aaPredicted RBP23.69■■□□□ 1.38
CAPN3-209ENST00000466222 COG6Q9Y2V7 657 aa23.69■■□□□ 1.38
CAPN3-209ENST00000466222 ATF7IPQ6VMQ6 1270 aa23.69■■□□□ 1.38
CAPN3-209ENST00000466222 SCN11AQ9UI33 1791 aa23.68■■□□□ 1.38
CAPN3-209ENST00000466222 KCNQ2O43526 872 aa23.68■■□□□ 1.38
CAPN3-209ENST00000466222 ANXA1P04083 346 aa23.68■■□□□ 1.38
CAPN3-209ENST00000466222 SEPT12Q8IYM1 358 aa23.68■■□□□ 1.38
CAPN3-209ENST00000466222 IPO9Q96P70 1041 aaKnown RBP23.68■■□□□ 1.38
CAPN3-209ENST00000466222 KIF16BQ96L93 1317 aa23.68■■□□□ 1.38
CAPN3-209ENST00000466222 CCDC30Q5VVM6 783 aa23.67■■□□□ 1.38
CAPN3-209ENST00000466222 ONECUT3O60422 494 aaPredicted RBP23.67■■□□□ 1.38
CAPN3-209ENST00000466222 PDE3AQ14432 1141 aa23.67■■□□□ 1.38
CAPN3-209ENST00000466222 ATG3Q9NT62 314 aa23.67■■□□□ 1.38
CAPN3-209ENST00000466222 USP16Q9Y5T5 823 aa23.67■■□□□ 1.38
CAPN3-209ENST00000466222 EP400Q96L91 3159 aa23.66■■□□□ 1.38
CAPN3-209ENST00000466222 FMNL2Q96PY5 1086 aa23.66■■□□□ 1.38
CAPN3-209ENST00000466222 CHPF2Q9P2E5 772 aa23.66■■□□□ 1.38
CAPN3-209ENST00000466222 PTF1AQ7RTS3 328 aa23.65■■□□□ 1.38
CAPN3-209ENST00000466222 DZIP1LQ8IYY4 767 aaKnown RBP23.65■■□□□ 1.38
CAPN3-209ENST00000466222 KDM3BQ7LBC6 1761 aa23.65■■□□□ 1.38
CAPN3-209ENST00000466222 STK31Q9BXU1 1019 aa23.65■■□□□ 1.38
CAPN3-209ENST00000466222 PHAXQ9H814 394 aaKnown RBP23.65■■□□□ 1.38
CAPN3-209ENST00000466222 TOGARAM1Q9Y4F4 1720 aa23.65■■□□□ 1.38
CAPN3-209ENST00000466222 SIPA1L3O60292 1781 aaPredicted RBP23.64■■□□□ 1.38
CAPN3-209ENST00000466222 BCL9O00512 1426 aa23.64■■□□□ 1.37
CAPN3-209ENST00000466222 HOXB7P09629 217 aa23.64■■□□□ 1.37
CAPN3-209ENST00000466222 PROSER3Q2NL68 480 aa23.64■■□□□ 1.37
CAPN3-209ENST00000466222 FTSJ3Q8IY81 847 aaKnown RBP23.64■■□□□ 1.37
CAPN3-209ENST00000466222 IPO8O15397 1037 aaKnown RBP23.63■■□□□ 1.37
CAPN3-209ENST00000466222 PIP4K2AP48426 406 aaPredicted RBP23.63■■□□□ 1.37
CAPN3-209ENST00000466222 WNK3Q9BYP7 1800 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms