RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 MYCP01106 439 aaPredicted RBP9.15□□□□□ -0.94
USH2A-203ENST00000463147 CSB-PGBD3P0DP91 1061 aa9.15□□□□□ -0.94
USH2A-203ENST00000463147 PGBD3Q8N328 593 aa9.15□□□□□ -0.94
USH2A-203ENST00000463147 GOLGA6L1Q8N7Z2 621 aa9.15□□□□□ -0.94
USH2A-203ENST00000463147 BCANQ96GW7 911 aa9.15□□□□□ -0.94
USH2A-203ENST00000463147 OSBPL3Q9H4L5 887 aa9.15□□□□□ -0.94
USH2A-203ENST00000463147 ITGB2P05107 769 aa9.14□□□□□ -0.95
USH2A-203ENST00000463147 GNASQ5JWF2 1037 aa9.14□□□□□ -0.95
USH2A-203ENST00000463147 GJD4Q96KN9 370 aaPredicted RBP9.14□□□□□ -0.95
USH2A-203ENST00000463147 XP32Q5T750 250 aa9.13□□□□□ -0.95
USH2A-203ENST00000463147 CNKSR1Q969H4 720 aa9.13□□□□□ -0.95
USH2A-203ENST00000463147 ZSCAN10Q96SZ4 725 aaPredicted RBP9.13□□□□□ -0.95
USH2A-203ENST00000463147 SCTRP47872 440 aa9.12□□□□□ -0.95
USH2A-203ENST00000463147 CENPCQ03188 943 aa9.12□□□□□ -0.95
USH2A-203ENST00000463147 ESCO1Q5FWF5 840 aa9.12□□□□□ -0.95
USH2A-203ENST00000463147 EFHC2Q5JST6 749 aa9.12□□□□□ -0.95
USH2A-203ENST00000463147 EDARADDQ8WWZ3 215 aa9.12□□□□□ -0.95
USH2A-203ENST00000463147 KLRG1Q96E93 195 aa9.12□□□□□ -0.95
USH2A-203ENST00000463147 ATXN7L1Q9ULK2 861 aaPredicted RBP9.12□□□□□ -0.95
USH2A-203ENST00000463147 BANK1Q8NDB2 785 aa9.11□□□□□ -0.95
USH2A-203ENST00000463147 RRAGCQ9HB90 399 aa9.11□□□□□ -0.95
USH2A-203ENST00000463147 BAG6P46379 1132 aa9.1□□□□□ -0.95
USH2A-203ENST00000463147 TMEM214Q6NUQ4 689 aaKnown RBP9.1□□□□□ -0.95
USH2A-203ENST00000463147 SNRPNP63162 240 aaKnown RBP9.09□□□□□ -0.95
USH2A-203ENST00000463147 XAGE2Q96GT9 111 aa9.09□□□□□ -0.95
USH2A-203ENST00000463147 GPAMQ9HCL2 828 aa9.09□□□□□ -0.95
USH2A-203ENST00000463147 NDUFB9Q9Y6M9 179 aa9.09□□□□□ -0.95
USH2A-203ENST00000463147 KRBA1A5PL33 1030 aa9.08□□□□□ -0.96
USH2A-203ENST00000463147 BMP4P12644 408 aa9.08□□□□□ -0.96
USH2A-203ENST00000463147 SHISA8B8ZZ34 492 aa9.07□□□□□ -0.96
USH2A-203ENST00000463147 IL2RAP01589 272 aa9.07□□□□□ -0.96
USH2A-203ENST00000463147 AMPD1P23109 780 aa9.07□□□□□ -0.96
USH2A-203ENST00000463147 FIGNL1Q6PIW4 674 aa9.07□□□□□ -0.96
USH2A-203ENST00000463147 SLCO4C1Q6ZQN7 724 aa9.07□□□□□ -0.96
USH2A-203ENST00000463147 RAB6BQ9NRW1 208 aa9.07□□□□□ -0.96
USH2A-203ENST00000463147 NOP53Q9NZM5 478 aaKnown RBP9.07□□□□□ -0.96
USH2A-203ENST00000463147 GNB5O14775 395 aa9.06□□□□□ -0.96
USH2A-203ENST00000463147 PHKA2P46019 1235 aa9.06□□□□□ -0.96
USH2A-203ENST00000463147 HRH3Q9Y5N1 445 aa9.06□□□□□ -0.96
USH2A-203ENST00000463147 RHBDD1Q8TEB9 315 aa9.05□□□□□ -0.96
USH2A-203ENST00000463147 SIRT1Q96EB6 747 aa9.05□□□□□ -0.96
USH2A-203ENST00000463147 THBS1P07996 1170 aa9.04□□□□□ -0.96
USH2A-203ENST00000463147 FGFR3P22607 806 aa9.04□□□□□ -0.96
USH2A-203ENST00000463147 MSX1P28360 303 aa9.04□□□□□ -0.96
USH2A-203ENST00000463147 USP4Q13107 963 aa9.04□□□□□ -0.96
USH2A-203ENST00000463147 C1orf216Q8TAB5 229 aa9.04□□□□□ -0.96
USH2A-203ENST00000463147 FHDC1Q9C0D6 1143 aaPredicted RBP9.04□□□□□ -0.96
USH2A-203ENST00000463147 CRISPLD1Q9H336 500 aa9.04□□□□□ -0.96
USH2A-203ENST00000463147 ARAFP10398 606 aa9.03□□□□□ -0.96
USH2A-203ENST00000463147 COL8A1P27658 744 aa9.03□□□□□ -0.96
USH2A-203ENST00000463147 UBAP2LQ14157 1087 aaKnown RBP9.03□□□□□ -0.96
USH2A-203ENST00000463147 GRIN2CQ14957 1233 aa9.03□□□□□ -0.96
USH2A-203ENST00000463147 C4orf17Q53FE4 359 aa9.03□□□□□ -0.96
USH2A-203ENST00000463147 C1orf229Q6ZS94 237 aaPredicted RBP9.03□□□□□ -0.96
USH2A-203ENST00000463147 RUBCNLQ9H714 662 aa9.03□□□□□ -0.96
USH2A-203ENST00000463147 CEP126Q9P2H0 1117 aa9.03□□□□□ -0.96
USH2A-203ENST00000463147 LINC00114Q6XXX2 140 aa9.02□□□□□ -0.97
USH2A-203ENST00000463147 PPARGC1BQ86YN6 1023 aaKnown RBP9.02□□□□□ -0.97
USH2A-203ENST00000463147 GGA1Q9UJY5 639 aa9.02□□□□□ -0.97
USH2A-203ENST00000463147 PRM3Q9NNZ6 103 aa9.01□□□□□ -0.97
USH2A-203ENST00000463147 NDFIP2Q9NV92 336 aa9.01□□□□□ -0.97
USH2A-203ENST00000463147 EPXP11678 715 aa9□□□□□ -0.97
USH2A-203ENST00000463147 EIF4G2P78344 907 aaKnown RBP eCLIP9□□□□□ -0.97
USH2A-203ENST00000463147 TBC1D9Q6ZT07 1266 aa9□□□□□ -0.97
USH2A-203ENST00000463147 NLRP8Q86W28 1048 aa9□□□□□ -0.97
USH2A-203ENST00000463147 ABHD17AQ96GS6 310 aa9□□□□□ -0.97
USH2A-203ENST00000463147 BTBD6Q96KE9 485 aa9□□□□□ -0.97
USH2A-203ENST00000463147 AVENQ9NQS1 362 aaPredicted RBP9□□□□□ -0.97
USH2A-203ENST00000463147 BNIP3LO60238 219 aa8.99□□□□□ -0.97
USH2A-203ENST00000463147 FURINP09958 794 aa8.99□□□□□ -0.97
USH2A-203ENST00000463147 TPRNQ4KMQ1 711 aa8.99□□□□□ -0.97
USH2A-203ENST00000463147 Q8N3U1 123 aa8.99□□□□□ -0.97
USH2A-203ENST00000463147 CCDC85AQ96PX6 553 aaPredicted RBP8.99□□□□□ -0.97
USH2A-203ENST00000463147 PCDHGC4Q9Y5F7 938 aa8.99□□□□□ -0.97
USH2A-203ENST00000463147 TLR1Q15399 786 aa8.98□□□□□ -0.97
USH2A-203ENST00000463147 RNF135Q8IUD6 432 aa8.98□□□□□ -0.97
USH2A-203ENST00000463147 CDCA7Q9BWT1 371 aaPredicted RBP8.98□□□□□ -0.97
USH2A-203ENST00000463147 DOLKQ9UPQ8 538 aa8.98□□□□□ -0.97
USH2A-203ENST00000463147 C2CD2LO14523 706 aa8.97□□□□□ -0.97
USH2A-203ENST00000463147 CTBSQ01459 385 aa8.97□□□□□ -0.97
USH2A-203ENST00000463147 SLFNL1Q499Z3 407 aa8.97□□□□□ -0.97
USH2A-203ENST00000463147 FAM182BQ5T319 152 aa8.97□□□□□ -0.97
USH2A-203ENST00000463147 MTMR14Q8NCE2 650 aa8.97□□□□□ -0.97
USH2A-203ENST00000463147 C1QTNF9BB2RNN3 333 aa8.96□□□□□ -0.98
USH2A-203ENST00000463147 HOXB4P17483 251 aaPredicted RBP8.96□□□□□ -0.98
USH2A-203ENST00000463147 ADH6P28332 368 aa8.96□□□□□ -0.98
USH2A-203ENST00000463147 DGKGP49619 791 aa8.96□□□□□ -0.98
USH2A-203ENST00000463147 IL27Q8NEV9 243 aa8.96□□□□□ -0.98
USH2A-203ENST00000463147 SUV39H2Q9H5I1 410 aa8.96□□□□□ -0.98
USH2A-203ENST00000463147 GPR37L1O60883 481 aa8.95□□□□□ -0.98
USH2A-203ENST00000463147 NIFKQ9BYG3 293 aaKnown RBP8.95□□□□□ -0.98
USH2A-203ENST00000463147 ETNK1Q9HBU6 452 aa8.95□□□□□ -0.98
USH2A-203ENST00000463147 NEURL1BA8MQ27 555 aa8.94□□□□□ -0.98
USH2A-203ENST00000463147 NEUROD2Q15784 382 aa8.94□□□□□ -0.98
USH2A-203ENST00000463147 ZCCHC2Q9C0B9 1178 aaKnown RBP8.94□□□□□ -0.98
USH2A-203ENST00000463147 ATXN7O15265 892 aaPredicted RBP8.93□□□□□ -0.98
USH2A-203ENST00000463147 PLA2G4AP47712 749 aa8.93□□□□□ -0.98
USH2A-203ENST00000463147 NBPF1Q3BBV0 1214 aa8.93□□□□□ -0.98
USH2A-203ENST00000463147 CD163Q86VB7 1156 aa8.93□□□□□ -0.98
USH2A-203ENST00000463147 SPDYE3A6NKU9 549 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms