RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 AEBP2Q6ZN18 517 aaPredicted RBP28.75■■■□□ 2.19
USH2A-203ENST00000463147 CHIC1Q5VXU3 224 aa27.32■■□□□ 1.96
USH2A-203ENST00000463147 SENP3Q9H4L4 574 aaPredicted RBP24.77■■□□□ 1.56
USH2A-203ENST00000463147 PHF23Q9BUL5 403 aaPredicted RBP24.33■■□□□ 1.49
USH2A-203ENST00000463147 FOXD1Q16676 465 aa22.95■■□□□ 1.26
USH2A-203ENST00000463147 PLPPR3Q6T4P5 718 aa21.86■■□□□ 1.09
USH2A-203ENST00000463147 MSH5O43196 834 aa21.71■■□□□ 1.07
USH2A-203ENST00000463147 PIAS4Q8N2W9 510 aaPredicted RBP21.48■■□□□ 1.03
USH2A-203ENST00000463147 POTEDQ86YR6 584 aa21.34■■□□□ 1.01
USH2A-203ENST00000463147 PPP6R1Q9UPN7 881 aa21.28■■□□□ 1
USH2A-203ENST00000463147 ADRA2BP18089 450 aa21.24■□□□□ 0.99
USH2A-203ENST00000463147 SCAF1Q9H7N4 1312 aaKnown RBP19.72■□□□□ 0.75
USH2A-203ENST00000463147 DMRT2Q9Y5R5 561 aa19.57■□□□□ 0.72
USH2A-203ENST00000463147 MAPK8IP2Q13387 824 aaPredicted RBP19.51■□□□□ 0.71
USH2A-203ENST00000463147 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
USH2A-203ENST00000463147 HOXD11P31277 338 aaPredicted RBP18.81■□□□□ 0.6
USH2A-203ENST00000463147 CNKSR2Q8WXI2 1034 aa18.81■□□□□ 0.6
USH2A-203ENST00000463147 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
USH2A-203ENST00000463147 RNF216Q9NWF9 866 aaPredicted RBP18.67■□□□□ 0.58
USH2A-203ENST00000463147 CACNB1Q02641 598 aaPredicted RBP18.64■□□□□ 0.57
USH2A-203ENST00000463147 NCBP3Q53F19 620 aaKnown RBP18.44■□□□□ 0.54
USH2A-203ENST00000463147 RNF39Q9H2S5 420 aa18.41■□□□□ 0.54
USH2A-203ENST00000463147 DNAJC5BQ9UF47 199 aa18.33■□□□□ 0.52
USH2A-203ENST00000463147 C1QBPQ07021 282 aaKnown RBP18.23■□□□□ 0.51
USH2A-203ENST00000463147 NPM3O75607 178 aaKnown RBP17.99■□□□□ 0.47
USH2A-203ENST00000463147 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.94■□□□□ 0.46
USH2A-203ENST00000463147 KCNA4P22459 653 aa17.48■□□□□ 0.39
USH2A-203ENST00000463147 U3KPZ7 1027 aaPredicted RBP17.46■□□□□ 0.39
USH2A-203ENST00000463147 CAPN15O75808 1086 aa17.28■□□□□ 0.36
USH2A-203ENST00000463147 APLP2Q06481 763 aa17.25■□□□□ 0.35
USH2A-203ENST00000463147 SPINK5Q9NQ38 1064 aaPredicted RBP17.2■□□□□ 0.34
USH2A-203ENST00000463147 DSG3P32926 999 aa17.18■□□□□ 0.34
USH2A-203ENST00000463147 SLC4A2P04920 1241 aa17.17■□□□□ 0.34
USH2A-203ENST00000463147 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
USH2A-203ENST00000463147 HNRNPUL2Q1KMD3 747 aaKnown RBP17.15■□□□□ 0.34
USH2A-203ENST00000463147 ZNF219Q9P2Y4 722 aaPredicted RBP17.04■□□□□ 0.32
USH2A-203ENST00000463147 SAMD1Q6SPF0 538 aaPredicted RBP16.99■□□□□ 0.31
USH2A-203ENST00000463147 TRHP20396 242 aaPredicted RBP16.95■□□□□ 0.3
USH2A-203ENST00000463147 ABCB7O75027 752 aa16.78■□□□□ 0.28
USH2A-203ENST00000463147 MYCNP04198 464 aaPredicted RBP16.75■□□□□ 0.27
USH2A-203ENST00000463147 POTEHQ6S545 545 aa16.66■□□□□ 0.26
USH2A-203ENST00000463147 SLC4A1APQ9BWU0 796 aaKnown RBP16.58■□□□□ 0.24
USH2A-203ENST00000463147 RBM42Q9BTD8 480 aaKnown RBP16.57■□□□□ 0.24
USH2A-203ENST00000463147 FOXD4L1Q9NU39 408 aa16.48■□□□□ 0.23
USH2A-203ENST00000463147 POLA2Q14181 598 aa16.47■□□□□ 0.23
USH2A-203ENST00000463147 ZBTB12Q9Y330 459 aaPredicted RBP16.3■□□□□ 0.2
USH2A-203ENST00000463147 ATF5Q9Y2D1 282 aaPredicted RBP16.17■□□□□ 0.18
USH2A-203ENST00000463147 CHRDL2Q6WN34 429 aa16.12■□□□□ 0.17
USH2A-203ENST00000463147 AKT1S1Q96B36 256 aa16.1■□□□□ 0.17
USH2A-203ENST00000463147 ATXN8OSP0DMR3 200 aa16.08■□□□□ 0.16
USH2A-203ENST00000463147 ZBTB22O15209 634 aa16■□□□□ 0.15
USH2A-203ENST00000463147 OSCARQ8IYS5 282 aa15.91■□□□□ 0.14
USH2A-203ENST00000463147 REM2Q8IYK8 340 aaPredicted RBP15.86■□□□□ 0.13
USH2A-203ENST00000463147 FBLN2P98095 1184 aa15.8■□□□□ 0.12
USH2A-203ENST00000463147 SPDYE2BA6NHP3 402 aa15.72■□□□□ 0.11
USH2A-203ENST00000463147 SPDYE6P0CI01 402 aa15.72■□□□□ 0.11
USH2A-203ENST00000463147 SPDYE2Q495Y8 402 aa15.72■□□□□ 0.11
USH2A-203ENST00000463147 PITPNM1O00562 1244 aa15.66■□□□□ 0.1
USH2A-203ENST00000463147 PIP4P2Q8N4L2 257 aa15.66■□□□□ 0.1
USH2A-203ENST00000463147 FXR2P51116 673 aaKnown RBP eCLIP15.6■□□□□ 0.09
USH2A-203ENST00000463147 SP7Q8TDD2 431 aaPredicted RBP15.58■□□□□ 0.08
USH2A-203ENST00000463147 SPDYE1Q8NFV5 336 aaPredicted RBP15.48■□□□□ 0.07
USH2A-203ENST00000463147 HAX1O00165 279 aa15.47■□□□□ 0.07
USH2A-203ENST00000463147 ZNF692Q9BU19 519 aaPredicted RBP15.46■□□□□ 0.07
USH2A-203ENST00000463147 MKRN4PQ13434 485 aaPredicted RBP15.45■□□□□ 0.06
USH2A-203ENST00000463147 SSUH2Q9Y2M2 353 aa15.42■□□□□ 0.06
USH2A-203ENST00000463147 CLEC11AQ9Y240 323 aa15.37■□□□□ 0.05
USH2A-203ENST00000463147 PRKAR2AP13861 404 aaKnown RBP15.29■□□□□ 0.04
USH2A-203ENST00000463147 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
USH2A-203ENST00000463147 PABPN1Q86U42 306 aaKnown RBP eCLIP15.19■□□□□ 0.02
USH2A-203ENST00000463147 PRR29P0C7W0 189 aa15.16■□□□□ 0.02
USH2A-203ENST00000463147 C19orf67A6NJJ6 358 aa15.1■□□□□ 0.01
USH2A-203ENST00000463147 EVX2Q03828 476 aa15.1■□□□□ 0.01
USH2A-203ENST00000463147 CHADLQ6NUI6 762 aa15.01□□□□□ -0.01
USH2A-203ENST00000463147 EHMT2Q96KQ7 1210 aa14.93□□□□□ -0.02
USH2A-203ENST00000463147 STAG3Q9UJ98 1225 aa14.91□□□□□ -0.02
USH2A-203ENST00000463147 GABBR2O75899 941 aa14.89□□□□□ -0.03
USH2A-203ENST00000463147 CLCN6P51797 869 aa14.87□□□□□ -0.03
USH2A-203ENST00000463147 FARP1Q9Y4F1 1045 aaPredicted RBP14.87□□□□□ -0.03
USH2A-203ENST00000463147 CD44P16070 742 aaKnown RBP14.81□□□□□ -0.04
USH2A-203ENST00000463147 SPDYE4A6NLX3 237 aa14.77□□□□□ -0.05
USH2A-203ENST00000463147 CREBZFQ9NS37 354 aa14.65□□□□□ -0.06
USH2A-203ENST00000463147 LHX8Q68G74 356 aa14.61□□□□□ -0.07
USH2A-203ENST00000463147 ZNF579Q8NAF0 562 aaKnown RBP14.6□□□□□ -0.07
USH2A-203ENST00000463147 ZRANB1Q9UGI0 708 aa14.58□□□□□ -0.08
USH2A-203ENST00000463147 PAK3O75914 559 aaPredicted RBP14.57□□□□□ -0.08
USH2A-203ENST00000463147 NPM1P06748 294 aaKnown RBP eCLIP14.56□□□□□ -0.08
USH2A-203ENST00000463147 DCBLD2Q96PD2 775 aa14.55□□□□□ -0.08
USH2A-203ENST00000463147 POTEIP0CG38 1075 aa14.48□□□□□ -0.09
USH2A-203ENST00000463147 PROM2Q8N271 834 aa14.38□□□□□ -0.11
USH2A-203ENST00000463147 MNX1P50219 401 aaPredicted RBP14.36□□□□□ -0.11
USH2A-203ENST00000463147 GALR2O43603 387 aaPredicted RBP14.33□□□□□ -0.12
USH2A-203ENST00000463147 PLEKHG5O94827 1062 aa14.29□□□□□ -0.12
USH2A-203ENST00000463147 PHF12Q96QT6 1004 aa14.29□□□□□ -0.12
USH2A-203ENST00000463147 MIER1Q8N108 512 aa14.13□□□□□ -0.15
USH2A-203ENST00000463147 TSPYL2Q9H2G4 693 aaPredicted RBP14.13□□□□□ -0.15
USH2A-203ENST00000463147 MS4A3Q96HJ5 214 aa14.12□□□□□ -0.15
USH2A-203ENST00000463147 ASTLQ6HA08 431 aaPredicted RBP14.11□□□□□ -0.15
USH2A-203ENST00000463147 SLC39A7Q92504 469 aa14.09□□□□□ -0.15
USH2A-203ENST00000463147 CCDC61Q9Y6R9 512 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms