RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 RBM42Q9BTD8 480 aaKnown RBP21.01■□□□□ 0.95
SKA3-204ENST00000462482 C4BP0C0L5 1744 aa21.01■□□□□ 0.95
SKA3-204ENST00000462482 SENP3-EIF4A1A0A087X0R7 540 aa21■□□□□ 0.95
SKA3-204ENST00000462482 CABP4P57796 275 aa21■□□□□ 0.95
SKA3-204ENST00000462482 ITPK1Q13572 414 aa21■□□□□ 0.95
SKA3-204ENST00000462482 TOGARAM1Q9Y4F4 1720 aa20.99■□□□□ 0.95
SKA3-204ENST00000462482 SMIM5Q71RC9 77 aa20.99■□□□□ 0.95
SKA3-204ENST00000462482 AMIGO3Q86WK7 504 aa20.99■□□□□ 0.95
SKA3-204ENST00000462482 RTCBQ9Y3I0 505 aaKnown RBP20.99■□□□□ 0.95
SKA3-204ENST00000462482 TRAPPC3LQ5T215 181 aa20.98■□□□□ 0.95
SKA3-204ENST00000462482 MTHFSP49914 203 aa20.97■□□□□ 0.95
SKA3-204ENST00000462482 SULT6B1Q6IMI4 303 aa20.95■□□□□ 0.94
SKA3-204ENST00000462482 NLGN1Q8N2Q7 840 aa20.95■□□□□ 0.94
SKA3-204ENST00000462482 CHD4Q14839 1912 aa20.95■□□□□ 0.94
SKA3-204ENST00000462482 MAP2P11137 1827 aaKnown RBP20.94■□□□□ 0.94
SKA3-204ENST00000462482 MMP10P09238 476 aa20.94■□□□□ 0.94
SKA3-204ENST00000462482 ADRA2BP18089 450 aa20.94■□□□□ 0.94
SKA3-204ENST00000462482 RC3H1Q5TC82 1133 aaKnown RBP20.94■□□□□ 0.94
SKA3-204ENST00000462482 ITGB4P16144 1822 aa20.93■□□□□ 0.94
SKA3-204ENST00000462482 RFC4P35249 363 aa20.93■□□□□ 0.94
SKA3-204ENST00000462482 AEBP1Q8IUX7 1158 aa20.93■□□□□ 0.94
SKA3-204ENST00000462482 UTRNP46939 3433 aa20.92■□□□□ 0.94
SKA3-204ENST00000462482 KDRP35968 1356 aa20.92■□□□□ 0.94
SKA3-204ENST00000462482 PTCD1O75127 700 aaKnown RBP20.91■□□□□ 0.94
SKA3-204ENST00000462482 TAF1LQ8IZX4 1826 aa20.91■□□□□ 0.94
SKA3-204ENST00000462482 CNTNAP4Q9C0A0 1308 aa20.91■□□□□ 0.94
SKA3-204ENST00000462482 WWC3Q9ULE0 1092 aa20.91■□□□□ 0.94
SKA3-204ENST00000462482 RPS6KA4O75676 772 aa20.9■□□□□ 0.94
SKA3-204ENST00000462482 GPBP1L1Q9HC44 474 aaPredicted RBP20.9■□□□□ 0.94
SKA3-204ENST00000462482 ATP10DQ9P241 1426 aa20.89■□□□□ 0.94
SKA3-204ENST00000462482 IL13P35225 146 aa20.89■□□□□ 0.93
SKA3-204ENST00000462482 NFATC2IPQ8NCF5 419 aa20.89■□□□□ 0.93
SKA3-204ENST00000462482 ARHGEF1Q92888 912 aaKnown RBP20.89■□□□□ 0.93
SKA3-204ENST00000462482 SLC4A9Q96Q91 983 aa20.89■□□□□ 0.93
SKA3-204ENST00000462482 CCDC87Q9NVE4 849 aa20.89■□□□□ 0.93
SKA3-204ENST00000462482 KDM6AO15550 1401 aaPredicted RBP20.88■□□□□ 0.93
SKA3-204ENST00000462482 PARP3Q9Y6F1 533 aa20.88■□□□□ 0.93
SKA3-204ENST00000462482 TGFB2P61812 414 aa20.87■□□□□ 0.93
SKA3-204ENST00000462482 UBR3Q6ZT12 1888 aa20.86■□□□□ 0.93
SKA3-204ENST00000462482 AKAP4Q5JQC9 854 aa20.86■□□□□ 0.93
SKA3-204ENST00000462482 AMER1Q5JTC6 1135 aaPredicted RBP20.86■□□□□ 0.93
SKA3-204ENST00000462482 KIF7Q2M1P5 1343 aa20.85■□□□□ 0.93
SKA3-204ENST00000462482 GYS1P13807 737 aa20.84■□□□□ 0.93
SKA3-204ENST00000462482 CRKLP46109 303 aaKnown RBP20.84■□□□□ 0.93
SKA3-204ENST00000462482 ZNF526Q8TF50 670 aaPredicted RBP20.84■□□□□ 0.93
SKA3-204ENST00000462482 BCS1LQ9Y276 419 aa20.83■□□□□ 0.93
SKA3-204ENST00000462482 A0A0G2JLW4 131 aa20.81■□□□□ 0.92
SKA3-204ENST00000462482 DIAPH1O60610 1272 aaKnown RBP20.81■□□□□ 0.92
SKA3-204ENST00000462482 HMOX1P09601 288 aa20.81■□□□□ 0.92
SKA3-204ENST00000462482 CC2D1BQ5T0F9 858 aaKnown RBP20.81■□□□□ 0.92
SKA3-204ENST00000462482 SLC52A2Q9HAB3 445 aa20.81■□□□□ 0.92
SKA3-204ENST00000462482 ADCY9O60503 1353 aa20.79■□□□□ 0.92
SKA3-204ENST00000462482 PXDNLA1KZ92 1463 aa20.79■□□□□ 0.92
SKA3-204ENST00000462482 C10orf71Q711Q0 1435 aa20.78■□□□□ 0.92
SKA3-204ENST00000462482 CICQ96RK0 1608 aaPredicted RBP20.78■□□□□ 0.92
SKA3-204ENST00000462482 ZNF831Q5JPB2 1677 aa20.78■□□□□ 0.92
SKA3-204ENST00000462482 ZPR1O75312 459 aa20.78■□□□□ 0.92
SKA3-204ENST00000462482 FCHSD2O94868 740 aa20.78■□□□□ 0.92
SKA3-204ENST00000462482 DPEP1P16444 411 aa20.78■□□□□ 0.92
SKA3-204ENST00000462482 ARHGAP27Q6ZUM4 889 aa20.78■□□□□ 0.92
SKA3-204ENST00000462482 USP42Q9H9J4 1324 aaKnown RBP20.78■□□□□ 0.92
SKA3-204ENST00000462482 RNMTO43148 476 aaKnown RBP20.77■□□□□ 0.92
SKA3-204ENST00000462482 LGR6Q9HBX8 967 aa20.77■□□□□ 0.92
SKA3-204ENST00000462482 SRP68Q9UHB9 627 aaKnown RBP20.77■□□□□ 0.92
SKA3-204ENST00000462482 DNAJC10Q8IXB1 793 aa20.76■□□□□ 0.91
SKA3-204ENST00000462482 PER1O15534 1290 aaPredicted RBP20.75■□□□□ 0.91
SKA3-204ENST00000462482 CNGB1Q14028 1251 aaPredicted RBP20.75■□□□□ 0.91
SKA3-204ENST00000462482 FKBP8Q14318 412 aa20.75■□□□□ 0.91
SKA3-204ENST00000462482 MTHFSDQ2M296 383 aaKnown RBP20.75■□□□□ 0.91
SKA3-204ENST00000462482 PIM2Q9P1W9 311 aa20.75■□□□□ 0.91
SKA3-204ENST00000462482 GOLGB1Q14789 3259 aaKnown RBP20.74■□□□□ 0.91
SKA3-204ENST00000462482 INTS5Q6P9B9 1019 aaKnown RBP20.74■□□□□ 0.91
SKA3-204ENST00000462482 U2SURPO15042 1029 aaKnown RBP20.73■□□□□ 0.91
SKA3-204ENST00000462482 SLC39A6Q13433 755 aa20.73■□□□□ 0.91
SKA3-204ENST00000462482 TTC5Q8N0Z6 440 aa20.73■□□□□ 0.91
SKA3-204ENST00000462482 DALRD3Q5D0E6 543 aaKnown RBP20.72■□□□□ 0.91
SKA3-204ENST00000462482 CYP19A1P11511 503 aaPredicted RBP20.71■□□□□ 0.91
SKA3-204ENST00000462482 USPL1Q5W0Q7 1092 aa20.71■□□□□ 0.91
SKA3-204ENST00000462482 VSIG10Q8N0Z9 540 aa20.71■□□□□ 0.91
SKA3-204ENST00000462482 SOS1Q07889 1333 aaPredicted RBP20.71■□□□□ 0.91
SKA3-204ENST00000462482 C4AP0C0L4 1744 aa20.7■□□□□ 0.9
SKA3-204ENST00000462482 STARD3NLO95772 234 aa20.7■□□□□ 0.9
SKA3-204ENST00000462482 DDR1Q08345 913 aa20.7■□□□□ 0.9
SKA3-204ENST00000462482 TEFQ10587 303 aa20.7■□□□□ 0.9
SKA3-204ENST00000462482 GAS2L2Q8NHY3 880 aa20.7■□□□□ 0.9
SKA3-204ENST00000462482 NPC1L1Q9UHC9 1359 aa20.7■□□□□ 0.9
SKA3-204ENST00000462482 COL5A3P25940 1745 aaPredicted RBP20.7■□□□□ 0.9
SKA3-204ENST00000462482 HSPA6P17066 643 aa20.69■□□□□ 0.9
SKA3-204ENST00000462482 CFAP53Q96M91 514 aa20.69■□□□□ 0.9
SKA3-204ENST00000462482 POLRMTO00411 1230 aaKnown RBP20.68■□□□□ 0.9
SKA3-204ENST00000462482 TM4SF1P30408 202 aa20.68■□□□□ 0.9
SKA3-204ENST00000462482 NARFQ9UHQ1 456 aa20.68■□□□□ 0.9
SKA3-204ENST00000462482 GNAT3A8MTJ3 354 aa20.67■□□□□ 0.9
SKA3-204ENST00000462482 KCNA3P22001 575 aa20.67■□□□□ 0.9
SKA3-204ENST00000462482 ZBTB1Q9Y2K1 713 aa20.67■□□□□ 0.9
SKA3-204ENST00000462482 COL15A1P39059 1388 aa20.67■□□□□ 0.9
SKA3-204ENST00000462482 MRC1P22897 1456 aa20.67■□□□□ 0.9
SKA3-204ENST00000462482 A0A087WZG4 1122 aa20.66■□□□□ 0.9
SKA3-204ENST00000462482 KIF3CO14782 793 aa20.66■□□□□ 0.9
SKA3-204ENST00000462482 CANXP27824 592 aaKnown RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms