RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 FBLN1P23142 703 aa11.72□□□□□ -0.53
COL28A1-205ENST00000453441 PPP2R1AP30153 589 aa11.72□□□□□ -0.53
COL28A1-205ENST00000453441 MTHFSP49914 203 aa11.72□□□□□ -0.53
COL28A1-205ENST00000453441 HSP90AB2PQ58FF8 381 aa11.72□□□□□ -0.53
COL28A1-205ENST00000453441 MYBBP1AQ9BQG0 1328 aaKnown RBP11.71□□□□□ -0.53
COL28A1-205ENST00000453441 MICALL2Q8IY33 904 aa11.71□□□□□ -0.53
COL28A1-205ENST00000453441 NLRP2Q9NX02 1062 aa11.71□□□□□ -0.53
COL28A1-205ENST00000453441 WNK3Q9BYP7 1800 aa11.71□□□□□ -0.54
COL28A1-205ENST00000453441 NCAPD2Q15021 1401 aa11.7□□□□□ -0.54
COL28A1-205ENST00000453441 NKX1-1Q15270 411 aaPredicted RBP11.7□□□□□ -0.54
COL28A1-205ENST00000453441 PRKRIP1Q9H875 184 aaPredicted RBP11.7□□□□□ -0.54
COL28A1-205ENST00000453441 THSD7AQ9UPZ6 1657 aa11.7□□□□□ -0.54
COL28A1-205ENST00000453441 PARP4Q9UKK3 1724 aaKnown RBP11.69□□□□□ -0.54
COL28A1-205ENST00000453441 ANP32CO43423 234 aa11.69□□□□□ -0.54
COL28A1-205ENST00000453441 EIF4A2Q14240 407 aaKnown RBP11.69□□□□□ -0.54
COL28A1-205ENST00000453441 LTV1Q96GA3 475 aaPredicted RBP11.69□□□□□ -0.54
COL28A1-205ENST00000453441 DIAPH1O60610 1272 aaKnown RBP11.68□□□□□ -0.54
COL28A1-205ENST00000453441 CNGB1Q14028 1251 aaPredicted RBP11.68□□□□□ -0.54
COL28A1-205ENST00000453441 NUDCQ9Y266 331 aa11.68□□□□□ -0.54
COL28A1-205ENST00000453441 COL3A1P02461 1466 aaPredicted RBP11.68□□□□□ -0.54
COL28A1-205ENST00000453441 DISP2A7MBM2 1401 aa11.68□□□□□ -0.54
COL28A1-205ENST00000453441 RGS12O14924 1447 aa11.68□□□□□ -0.54
COL28A1-205ENST00000453441 IGSF1Q8N6C5 1336 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 RGPD1P0DJD0 1748 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 IL2RBP14784 551 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 IL13P35225 146 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 FAM98CQ17RN3 349 aaKnown RBP11.67□□□□□ -0.54
COL28A1-205ENST00000453441 NBPF6Q5VWK0 638 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 RAPGEF4Q8WZA2 1011 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 NBPF4Q96M43 638 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 USP35Q9P2H5 1018 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 RGPD2P0DJD1 1756 aa11.67□□□□□ -0.54
COL28A1-205ENST00000453441 A0A0G2JS52 829 aa11.66□□□□□ -0.54
COL28A1-205ENST00000453441 MYT1Q01538 1121 aa11.66□□□□□ -0.54
COL28A1-205ENST00000453441 SEPT12Q8IYM1 358 aa11.66□□□□□ -0.54
COL28A1-205ENST00000453441 EYA1Q99502 592 aa11.66□□□□□ -0.54
COL28A1-205ENST00000453441 KDRP35968 1356 aa11.66□□□□□ -0.54
COL28A1-205ENST00000453441 TATP17735 454 aaPredicted RBP11.65□□□□□ -0.54
COL28A1-205ENST00000453441 DDB1Q16531 1140 aa11.65□□□□□ -0.54
COL28A1-205ENST00000453441 BBXQ8WY36 941 aaPredicted RBP11.65□□□□□ -0.54
COL28A1-205ENST00000453441 TNS2Q63HR2 1409 aa11.65□□□□□ -0.54
COL28A1-205ENST00000453441 LRRC37A3O60309 1634 aa11.64□□□□□ -0.55
COL28A1-205ENST00000453441 OVOS2A0A0G2JMS6 1433 aa11.64□□□□□ -0.55
COL28A1-205ENST00000453441 EXOC5O00471 708 aa11.63□□□□□ -0.55
COL28A1-205ENST00000453441 PDE3BQ13370 1112 aa11.63□□□□□ -0.55
COL28A1-205ENST00000453441 KRT27Q7Z3Y8 459 aa11.63□□□□□ -0.55
COL28A1-205ENST00000453441 BRWD3Q6RI45 1802 aa11.63□□□□□ -0.55
COL28A1-205ENST00000453441 BCL9O00512 1426 aa11.62□□□□□ -0.55
COL28A1-205ENST00000453441 PPP1R37O75864 691 aa11.62□□□□□ -0.55
COL28A1-205ENST00000453441 PNNQ9H307 717 aaKnown RBP11.62□□□□□ -0.55
COL28A1-205ENST00000453441 PKD1L3Q7Z443 1732 aa11.62□□□□□ -0.55
COL28A1-205ENST00000453441 MEGF6O75095 1541 aa11.61□□□□□ -0.55
COL28A1-205ENST00000453441 SNPHO15079 494 aa11.61□□□□□ -0.55
COL28A1-205ENST00000453441 GTPBP6O43824 516 aaPredicted RBP11.61□□□□□ -0.55
COL28A1-205ENST00000453441 AMOTQ4VCS5 1084 aa11.61□□□□□ -0.55
COL28A1-205ENST00000453441 SULT6B1Q6IMI4 303 aa11.61□□□□□ -0.55
COL28A1-205ENST00000453441 USHBP1Q8N6Y0 703 aa11.61□□□□□ -0.55
COL28A1-205ENST00000453441 ZCRB1Q8TBF4 217 aaKnown RBP11.61□□□□□ -0.55
COL28A1-205ENST00000453441 SPG7Q9UQ90 795 aa11.61□□□□□ -0.55
COL28A1-205ENST00000453441 PCDH11XQ9BZA7 1347 aa11.6□□□□□ -0.55
COL28A1-205ENST00000453441 PCDH11YQ9BZA8 1340 aa11.6□□□□□ -0.55
COL28A1-205ENST00000453441 U2SURPO15042 1029 aaKnown RBP11.6□□□□□ -0.55
COL28A1-205ENST00000453441 FCHSD2O94868 740 aa11.6□□□□□ -0.55
COL28A1-205ENST00000453441 PLEKHO1Q53GL0 409 aaPredicted RBP11.6□□□□□ -0.55
COL28A1-205ENST00000453441 NEFMP07197 916 aa11.59□□□□□ -0.55
COL28A1-205ENST00000453441 U2AF1L5P0DN76 240 aaPredicted RBP11.59□□□□□ -0.55
COL28A1-205ENST00000453441 U2AF1Q01081 240 aaKnown RBP eCLIP11.59□□□□□ -0.55
COL28A1-205ENST00000453441 FAM196AQ6ZSG2 479 aa11.59□□□□□ -0.55
COL28A1-205ENST00000453441 WDR43Q15061 677 aaKnown RBP eCLIP11.58□□□□□ -0.56
COL28A1-205ENST00000453441 DIEXFQ68CQ4 756 aaKnown RBP11.58□□□□□ -0.56
COL28A1-205ENST00000453441 SHANK3Q9BYB0 1731 aa11.57□□□□□ -0.56
COL28A1-205ENST00000453441 HSP90AB1P08238 724 aaKnown RBP11.57□□□□□ -0.56
COL28A1-205ENST00000453441 CCDC125Q86Z20 511 aa11.57□□□□□ -0.56
COL28A1-205ENST00000453441 AEBP1Q8IUX7 1158 aa11.57□□□□□ -0.56
COL28A1-205ENST00000453441 HMOX1P09601 288 aa11.56□□□□□ -0.56
COL28A1-205ENST00000453441 ILDR2Q71H61 639 aa11.56□□□□□ -0.56
COL28A1-205ENST00000453441 IFNL2Q8IZJ0 200 aa11.56□□□□□ -0.56
COL28A1-205ENST00000453441 GAS2L2Q8NHY3 880 aa11.56□□□□□ -0.56
COL28A1-205ENST00000453441 RSPH6AQ9H0K4 717 aa11.56□□□□□ -0.56
COL28A1-205ENST00000453441 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.56□□□□□ -0.56
COL28A1-205ENST00000453441 CCER2I3L3R5 266 aa11.55□□□□□ -0.56
COL28A1-205ENST00000453441 C1orf141Q5JVX7 400 aa11.55□□□□□ -0.56
COL28A1-205ENST00000453441 TMEM92Q6UXU6 159 aa11.55□□□□□ -0.56
COL28A1-205ENST00000453441 MARCH10Q8NA82 808 aaPredicted RBP11.55□□□□□ -0.56
COL28A1-205ENST00000453441 MRS2Q9HD23 443 aa11.55□□□□□ -0.56
COL28A1-205ENST00000453441 PRKAR2BP31323 418 aa11.54□□□□□ -0.56
COL28A1-205ENST00000453441 DDX54Q8TDD1 881 aaKnown RBP11.54□□□□□ -0.56
COL28A1-205ENST00000453441 MAPK8IP3Q9UPT6 1336 aa11.54□□□□□ -0.56
COL28A1-205ENST00000453441 PHKG2P15735 406 aa11.53□□□□□ -0.56
COL28A1-205ENST00000453441 AKAP4Q5JQC9 854 aa11.53□□□□□ -0.56
COL28A1-205ENST00000453441 ZNF530Q6P9A1 599 aaPredicted RBP11.53□□□□□ -0.56
COL28A1-205ENST00000453441 SBF2Q86WG5 1849 aa11.53□□□□□ -0.56
COL28A1-205ENST00000453441 NHSQ6T4R5 1651 aa11.52□□□□□ -0.56
COL28A1-205ENST00000453441 CYP27B1O15528 508 aa11.52□□□□□ -0.57
COL28A1-205ENST00000453441 SF3B2Q13435 895 aaKnown RBP11.52□□□□□ -0.57
COL28A1-205ENST00000453441 FAM163AQ96GL9 167 aaPredicted RBP11.52□□□□□ -0.57
COL28A1-205ENST00000453441 DCAF5Q96JK2 942 aa11.52□□□□□ -0.57
COL28A1-205ENST00000453441 HTATSF1O43719 755 aaKnown RBP11.51□□□□□ -0.57
COL28A1-205ENST00000453441 PNISRQ8TF01 805 aaKnown RBP11.51□□□□□ -0.57
COL28A1-205ENST00000453441 KAT6BQ8WYB5 2073 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms