RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 IL2RAP01589 272 aa8.68□□□□□ -1.02
VPS29-202ENST00000447578 ZNF592Q92610 1267 aa8.68□□□□□ -1.02
VPS29-202ENST00000447578 CNKSR1Q969H4 720 aa8.68□□□□□ -1.02
VPS29-202ENST00000447578 GMCL1Q96IK5 515 aa8.68□□□□□ -1.02
VPS29-202ENST00000447578 TIMMDC1Q9NPL8 285 aa8.68□□□□□ -1.02
VPS29-202ENST00000447578 SPATA31C2B4DYI2 1134 aa8.67□□□□□ -1.02
VPS29-202ENST00000447578 IGF1RP08069 1367 aa8.67□□□□□ -1.02
VPS29-202ENST00000447578 FURINP09958 794 aa8.67□□□□□ -1.02
VPS29-202ENST00000447578 CENPCQ03188 943 aa8.67□□□□□ -1.02
VPS29-202ENST00000447578 FOXR1Q6PIV2 292 aa8.67□□□□□ -1.02
VPS29-202ENST00000447578 MBIPQ9NS73 344 aa8.67□□□□□ -1.02
VPS29-202ENST00000447578 H7C1W4 665 aa8.66□□□□□ -1.02
VPS29-202ENST00000447578 APBB1O00213 710 aa8.66□□□□□ -1.02
VPS29-202ENST00000447578 WASLO00401 505 aaPredicted RBP8.66□□□□□ -1.02
VPS29-202ENST00000447578 STAU1O95793 577 aaKnown RBP8.66□□□□□ -1.02
VPS29-202ENST00000447578 GNRH1P01148 92 aa8.66□□□□□ -1.02
VPS29-202ENST00000447578 PHKA2P46019 1235 aa8.66□□□□□ -1.02
VPS29-202ENST00000447578 TAS1R3Q7RTX0 852 aa8.66□□□□□ -1.02
VPS29-202ENST00000447578 ESYT1Q9BSJ8 1104 aa8.66□□□□□ -1.02
VPS29-202ENST00000447578 IRF5Q13568 498 aa8.65□□□□□ -1.02
VPS29-202ENST00000447578 MYCP01106 439 aaPredicted RBP8.64□□□□□ -1.03
VPS29-202ENST00000447578 F11P03951 625 aa8.64□□□□□ -1.03
VPS29-202ENST00000447578 THBS1P07996 1170 aa8.64□□□□□ -1.03
VPS29-202ENST00000447578 WDR44Q5JSH3 913 aa8.64□□□□□ -1.03
VPS29-202ENST00000447578 NUCKS1Q9H1E3 243 aaKnown RBP8.64□□□□□ -1.03
VPS29-202ENST00000447578 GPAMQ9HCL2 828 aa8.64□□□□□ -1.03
VPS29-202ENST00000447578 HRH3Q9Y5N1 445 aa8.64□□□□□ -1.03
VPS29-202ENST00000447578 PHTF2Q8N3S3 785 aa8.63□□□□□ -1.03
VPS29-202ENST00000447578 ACDQ96AP0 544 aa8.63□□□□□ -1.03
VPS29-202ENST00000447578 XAGE2Q96GT9 111 aa8.63□□□□□ -1.03
VPS29-202ENST00000447578 TRERF1Q96PN7 1200 aa8.63□□□□□ -1.03
VPS29-202ENST00000447578 ZSCAN10Q96SZ4 725 aaPredicted RBP8.63□□□□□ -1.03
VPS29-202ENST00000447578 FHDC1Q9C0D6 1143 aaPredicted RBP8.62□□□□□ -1.03
VPS29-202ENST00000447578 MX2P20592 715 aa8.61□□□□□ -1.03
VPS29-202ENST00000447578 EIF4G2P78344 907 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS29-202ENST00000447578 VAC14Q08AM6 782 aa8.61□□□□□ -1.03
VPS29-202ENST00000447578 NEDD1Q8NHV4 660 aa8.61□□□□□ -1.03
VPS29-202ENST00000447578 DOLKQ9UPQ8 538 aa8.61□□□□□ -1.03
VPS29-202ENST00000447578 BCRP11274 1271 aa8.6□□□□□ -1.03
VPS29-202ENST00000447578 SLFNL1Q499Z3 407 aa8.6□□□□□ -1.03
VPS29-202ENST00000447578 C4orf17Q53FE4 359 aa8.6□□□□□ -1.03
VPS29-202ENST00000447578 GDPD2Q9HCC8 539 aa8.6□□□□□ -1.03
VPS29-202ENST00000447578 USP4Q13107 963 aa8.59□□□□□ -1.03
VPS29-202ENST00000447578 OXLD1Q5BKU9 147 aa8.59□□□□□ -1.03
VPS29-202ENST00000447578 TMEM214Q6NUQ4 689 aaKnown RBP8.59□□□□□ -1.03
VPS29-202ENST00000447578 RNF135Q8IUD6 432 aa8.59□□□□□ -1.03
VPS29-202ENST00000447578 ETNK1Q9HBU6 452 aa8.59□□□□□ -1.03
VPS29-202ENST00000447578 RUBCNLQ9H714 662 aa8.58□□□□□ -1.04
VPS29-202ENST00000447578 PRM3Q9NNZ6 103 aa8.58□□□□□ -1.04
VPS29-202ENST00000447578 A0A1B0GTH6 734 aa8.57□□□□□ -1.04
VPS29-202ENST00000447578 ABL2P42684 1182 aa8.57□□□□□ -1.04
VPS29-202ENST00000447578 ESCO1Q5FWF5 840 aa8.57□□□□□ -1.04
VPS29-202ENST00000447578 GNASQ5JWF2 1037 aa8.57□□□□□ -1.04
VPS29-202ENST00000447578 KRBA1A5PL33 1030 aa8.56□□□□□ -1.04
VPS29-202ENST00000447578 MSX1P28360 303 aa8.56□□□□□ -1.04
VPS29-202ENST00000447578 GTF2E1P29083 439 aaPredicted RBP8.56□□□□□ -1.04
VPS29-202ENST00000447578 UBAP2LQ14157 1087 aaKnown RBP8.56□□□□□ -1.04
VPS29-202ENST00000447578 CHIC2Q9UKJ5 165 aa8.56□□□□□ -1.04
VPS29-202ENST00000447578 TLR1Q15399 786 aa8.55□□□□□ -1.04
VPS29-202ENST00000447578 ALYREFQ86V81 257 aaKnown RBP8.55□□□□□ -1.04
VPS29-202ENST00000447578 CFHR5Q9BXR6 569 aa8.55□□□□□ -1.04
VPS29-202ENST00000447578 NSFL1CQ9UNZ2 370 aaKnown RBP8.55□□□□□ -1.04
VPS29-202ENST00000447578 OIP5O43482 229 aa8.54□□□□□ -1.04
VPS29-202ENST00000447578 C1orf229Q6ZS94 237 aaPredicted RBP8.54□□□□□ -1.04
VPS29-202ENST00000447578 PPARGC1BQ86YN6 1023 aaKnown RBP8.54□□□□□ -1.04
VPS29-202ENST00000447578 OXCT2Q9BYC2 517 aaPredicted RBP8.54□□□□□ -1.04
VPS29-202ENST00000447578 CSB-PGBD3P0DP91 1061 aa8.53□□□□□ -1.04
VPS29-202ENST00000447578 SCNN1DP51172 638 aa8.53□□□□□ -1.04
VPS29-202ENST00000447578 PGBD3Q8N328 593 aa8.53□□□□□ -1.04
VPS29-202ENST00000447578 RHBDD1Q8TEB9 315 aa8.53□□□□□ -1.04
VPS29-202ENST00000447578 KLRG1Q96E93 195 aa8.53□□□□□ -1.04
VPS29-202ENST00000447578 SHISA8B8ZZ34 492 aa8.52□□□□□ -1.05
VPS29-202ENST00000447578 MAP2K3P46734 347 aa8.52□□□□□ -1.05
VPS29-202ENST00000447578 PLA2G4AP47712 749 aa8.52□□□□□ -1.05
VPS29-202ENST00000447578 GDF10P55107 478 aa8.52□□□□□ -1.05
VPS29-202ENST00000447578 ZMYM1Q5SVZ6 1142 aa8.52□□□□□ -1.05
VPS29-202ENST00000447578 ABHD17AQ96GS6 310 aa8.52□□□□□ -1.05
VPS29-202ENST00000447578 C2CD2LO14523 706 aa8.51□□□□□ -1.05
VPS29-202ENST00000447578 INHAP05111 366 aa8.51□□□□□ -1.05
VPS29-202ENST00000447578 SNRPNP63162 240 aaKnown RBP8.51□□□□□ -1.05
VPS29-202ENST00000447578 PLPP7Q8NBV4 271 aa8.51□□□□□ -1.05
VPS29-202ENST00000447578 PHF24Q9UPV7 400 aa8.51□□□□□ -1.05
VPS29-202ENST00000447578 BNIP3LO60238 219 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 CTBSQ01459 385 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 SEMA3FQ13275 785 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 EFHC2Q5JST6 749 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 KRTAP19-1Q8IUB9 90 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 SIRT1Q96EB6 747 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 LRRC4BQ9NT99 713 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 SERTAD1Q9UHV2 236 aa8.5□□□□□ -1.05
VPS29-202ENST00000447578 PIK3CDO00329 1044 aa8.49□□□□□ -1.05
VPS29-202ENST00000447578 MCM6Q14566 821 aa8.49□□□□□ -1.05
VPS29-202ENST00000447578 LBRQ14739 615 aaKnown RBP8.49□□□□□ -1.05
VPS29-202ENST00000447578 WASHC4Q2M389 1173 aa8.49□□□□□ -1.05
VPS29-202ENST00000447578 NDFIP2Q9NV92 336 aa8.49□□□□□ -1.05
VPS29-202ENST00000447578 BMP4P12644 408 aa8.48□□□□□ -1.05
VPS29-202ENST00000447578 MAP7D1Q3KQU3 841 aa8.48□□□□□ -1.05
VPS29-202ENST00000447578 AIDAQ96BJ3 306 aa8.48□□□□□ -1.05
VPS29-202ENST00000447578 CRISPLD1Q9H336 500 aa8.48□□□□□ -1.05
VPS29-202ENST00000447578 GOLGA2P5Q9HBQ8 144 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms