RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 METTL16Q86W50 562 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 ZNF654Q8IZM8 581 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 NLGN1Q8N2Q7 840 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 EYA1Q99502 592 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 FKBPLQ9UIM3 349 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 K7ELQ4 463 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SMAPO00193 183 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 ILDR2Q71H61 639 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 TATDN2Q93075 761 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 CEP126Q9P2H0 1117 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 DOLKQ9UPQ8 538 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 R3HCC1Q9Y3T6 440 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 CCDC194A0A1B0GVG4 234 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 SEC24BO95487 1268 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 SSBP05455 408 aaKnown RBP eCLIP3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 FAM50AQ14320 339 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 APBB1IPQ7Z5R6 666 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 USP48Q86UV5 1035 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 NEUROD4Q9HD90 331 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 FAN1Q9Y2M0 1017 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 PCDHGB7Q9Y5F8 929 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 RNF40O75150 1001 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 CLDN10P78369 228 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 ARHGAP4P98171 946 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 BIRC2Q13490 618 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 TMC4Q7Z404 712 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 TRIM55Q9BYV6 548 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 ADAM33Q9BZ11 813 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 PCDH12Q9NPG4 1184 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 SETQ01105 290 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 ZNF746Q6NUN9 644 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 JDP2Q8WYK2 163 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 SRPK1Q96SB4 655 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 SLC4A5Q9BY07 1137 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 RBCK1Q9BYM8 510 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 PRKD2Q9BZL6 878 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 TCEAL9Q9UHQ7 104 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 PCDHGA4Q9Y5G9 962 aa3.1□□□□□ -1.91
CCDC88A-208ENST00000444458 CCDC85CA6NKD9 419 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 CREB3O43889 395 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 PTK2Q05397 1052 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 SMC5Q8IY18 1101 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 BRINP2Q9C0B6 783 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 MCCD1P59942 119 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 EHHADHQ08426 723 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 TEX2Q8IWB9 1127 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 GGT7Q9UJ14 662 aa3.09□□□□□ -1.91
CCDC88A-208ENST00000444458 EIF3JO75822 258 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 MPSTP25325 297 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 RBL2Q08999 1139 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 FUT2Q10981 343 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 SPTY2D1Q68D10 685 aaPredicted RBP3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 RETREG3Q86VR2 466 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 PPARGC1BQ86YN6 1023 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 HELQQ8TDG4 1101 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 CHMP7Q8WUX9 453 aaPredicted RBP3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 DMRTB1Q96MA1 342 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 PLCD4Q9BRC7 762 aa3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 ESF1Q9H501 851 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-208ENST00000444458 TREHO43280 583 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 OCLNQ16625 522 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 PLEKHG6Q3KR16 790 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 ZNF394Q53GI3 561 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 ALKBH2Q6NS38 261 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 HS2ST1Q7LGA3 356 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 FMNL3Q8IVF7 1028 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 TTC16Q8NEE8 873 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.08□□□□□ -1.924e-6■■■■■ 38.5
CCDC88A-208ENST00000444458 FAM198AQ9UFP1 575 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 PLIN1O60240 522 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 XRCC5P13010 732 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 DAB2P98082 770 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 ZBTB33Q86T24 672 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 DZIP3Q86Y13 1208 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 WDR75Q8IWA0 830 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 IRF2BPLQ9H1B7 796 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 WWC3Q9ULE0 1092 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 PNMA6FA0A0J9YX94 578 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 PRC1O43663 620 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 SAFB2Q14151 953 aaKnown RBP eCLIP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 ALG1LQ6GMV1 187 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 MPNDQ8N594 471 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 RNF166Q96A37 237 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 GMLQ99445 158 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 UBA5Q9GZZ9 404 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 TSKSQ9UJT2 592 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 KIAA1024Q9UPX6 916 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 ATP6V1AP38606 617 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 FMR1Q06787 632 aaKnown RBP eCLIP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 FKBP5Q13451 457 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 SIX5Q8N196 739 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 PMM1Q92871 262 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 NIF3L1Q9GZT8 377 aa3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 DDX56Q9NY93 547 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-208ENST00000444458 EMP3P54852 163 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 Q3C1V9 767 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 ODR4Q5SWX8 454 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 PPP4R4Q6NUP7 873 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 FERMT3Q86UX7 667 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 KCNH8Q96L42 1107 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms