RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 CHMP5Q9NZZ3 219 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 S100BP04271 92 aaPredicted RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 LONRF1Q17RB8 773 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 NOM1Q5C9Z4 860 aaKnown RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 SHQ1Q6PI26 577 aaKnown RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 CLEC4GQ6UXB4 293 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 TMEM110Q86TL2 294 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 SMC5Q8IY18 1101 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 FEZ1Q99689 392 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 TANGO6Q9C0B7 1094 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 INTUQ9ULD6 942 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 TMA7Q9Y2S6 64 aaKnown RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 IKBKGQ9Y6K9 419 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 WWC2Q6AWC2 1192 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 HOOK3Q86VS8 718 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 CADPS2Q86UW7 1296 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 DDX12PQ92771 950 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 DUSP9Q99956 384 aaKnown RBP6.35□□□□□ -1.39
PTPN4-203ENST00000430976 GOLGA6L19H0YKK7 550 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 CCDC65Q8IXS2 484 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 FAM81BQ96LP2 452 aa6.35□□□□□ -1.39
PTPN4-203ENST00000430976 SEMA3EO15041 775 aa6.34□□□□□ -1.39
PTPN4-203ENST00000430976 FCHSD2O94868 740 aa6.34□□□□□ -1.39
PTPN4-203ENST00000430976 VIMP08670 466 aaKnown RBP6.34□□□□□ -1.39
PTPN4-203ENST00000430976 MYCLP1P12525 358 aaPredicted RBP6.34□□□□□ -1.39
PTPN4-203ENST00000430976 KIF16BQ96L93 1317 aa6.34□□□□□ -1.39
PTPN4-203ENST00000430976 HOXD11P31277 338 aaPredicted RBP6.34□□□□□ -1.39
PTPN4-203ENST00000430976 MGARPQ8TDB4 240 aa6.34□□□□□ -1.39
PTPN4-203ENST00000430976 CD248Q9HCU0 757 aa6.34□□□□□ -1.39
PTPN4-203ENST00000430976 GJA3Q9Y6H8 435 aa6.34□□□□□ -1.39
PTPN4-203ENST00000430976 HSP90AB1P08238 724 aaKnown RBP6.34□□□□□ -1.4
PTPN4-203ENST00000430976 CDR1P51861 262 aa6.34□□□□□ -1.4
PTPN4-203ENST00000430976 ZSCAN26Q16670 478 aa6.34□□□□□ -1.4
PTPN4-203ENST00000430976 IQCF2Q8IXL9 164 aa6.34□□□□□ -1.4
PTPN4-203ENST00000430976 NGDNQ8NEJ9 315 aaKnown RBP6.34□□□□□ -1.4
PTPN4-203ENST00000430976 C17orf50Q8WW18 174 aa6.34□□□□□ -1.4
PTPN4-203ENST00000430976 CEP126Q9P2H0 1117 aa6.34□□□□□ -1.4
PTPN4-203ENST00000430976 SLC26A4O43511 780 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 PPP2R5BQ15173 497 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 BORCS6Q96GS4 357 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 TMCC3Q9ULS5 477 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 TRIM64CA6NLI5 447 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 IGHDP01880 384 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 HSPA5P11021 654 aaKnown RBP6.33□□□□□ -1.4
PTPN4-203ENST00000430976 FOSL1P15407 271 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 MCM6Q14566 821 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 PTPROQ16827 1216 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 BRMS1Q9HCU9 246 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 POU5F1Q01860 360 aaKnown RBP6.33□□□□□ -1.4
PTPN4-203ENST00000430976 CCDC173Q0VFZ6 552 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 MYSM1Q5VVJ2 828 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 RBM46Q8TBY0 533 aaKnown RBP6.33□□□□□ -1.4
PTPN4-203ENST00000430976 BICD1Q96G01 975 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 SPATA17Q96L03 361 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 IRF2BPLQ9H1B7 796 aa6.33□□□□□ -1.4
PTPN4-203ENST00000430976 ARIH1Q9Y4X5 557 aaPredicted RBP6.33□□□□□ -1.4
PTPN4-203ENST00000430976 CCDC85CA6NKD9 419 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 PRPHP41219 470 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 BECN1Q14457 450 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 BMS1Q14692 1282 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 FXNQ16595 210 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 TDRD7Q8NHU6 1098 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 USP6NLQ92738 828 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 THOC1Q96FV9 657 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 BCL2L13Q9BXK5 485 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 INO80BQ9C086 356 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 NACA2Q9H009 215 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 ZSWIM4Q9H7M6 989 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 XRCC6P12956 609 aaKnown RBP eCLIP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 JMYQ8N9B5 988 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 CRACR2AQ9BSW2 395 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 FBXL5Q9UKA1 691 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 SMTNL1A8MU46 457 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 PDE4AP27815 886 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 DMPKQ09013 629 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 NAIF1Q69YI7 327 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 SMCR8Q8TEV9 937 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 TFIP11Q9UBB9 837 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 LINC00854A0A1B0GVQ3 168 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 DYNC1I1O14576 645 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 KINO60870 393 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 LDHCP07864 332 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 IRX1P78414 480 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 PPP2R5CQ13362 524 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 RBBP5Q15291 538 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 SYCP2LQ5T4T6 812 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 SEPT14Q6ZU15 432 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 CTNNBL1Q8WYA6 563 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 TSR2Q969E8 191 aaKnown RBP6.32□□□□□ -1.4
PTPN4-203ENST00000430976 RUFY1Q96T51 708 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 MKS1Q9NXB0 559 aa6.32□□□□□ -1.4
PTPN4-203ENST00000430976 NACADO15069 1562 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 CD53P19397 219 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 ZBED6P86452 979 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 IFT88Q13099 833 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 CFAP58Q5T655 872 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 HHATQ5VTY9 493 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 SYNE3Q6ZMZ3 975 aa6.31□□□□□ -1.4
PTPN4-203ENST00000430976 BARGINQ6ZT62 677 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms