RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 TEFQ10587 303 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 ILDR2Q71H61 639 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 USHBP1Q8N6Y0 703 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 STK31Q9BXU1 1019 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 QTRT2Q9H974 415 aaKnown RBP11.99□□□□□ -0.49
HMGB4-201ENST00000425537 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.99□□□□□ -0.49
HMGB4-201ENST00000425537 SPG7Q9UQ90 795 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 AXIN2Q9Y2T1 843 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 NWD2Q9ULI1 1742 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 RGPD2P0DJD1 1756 aa11.98□□□□□ -0.49
HMGB4-201ENST00000425537 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.98□□□□□ -0.49
HMGB4-201ENST00000425537 ELL2O00472 640 aaPredicted RBP11.98□□□□□ -0.49
HMGB4-201ENST00000425537 RLBP1P12271 317 aa11.98□□□□□ -0.49
HMGB4-201ENST00000425537 CCDC30Q5VVM6 783 aa11.98□□□□□ -0.49
HMGB4-201ENST00000425537 TSPYL6Q8N831 410 aa11.98□□□□□ -0.49
HMGB4-201ENST00000425537 NLRP2Q9NX02 1062 aa11.98□□□□□ -0.49
HMGB4-201ENST00000425537 USP35Q9P2H5 1018 aa11.98□□□□□ -0.49
HMGB4-201ENST00000425537 GLI3P10071 1580 aa11.97□□□□□ -0.49
HMGB4-201ENST00000425537 ATRNO75882 1429 aa11.97□□□□□ -0.49
HMGB4-201ENST00000425537 CEMIPQ8WUJ3 1361 aa11.97□□□□□ -0.49
HMGB4-201ENST00000425537 HOXB7P09629 217 aa11.97□□□□□ -0.49
HMGB4-201ENST00000425537 LARP1Q6PKG0 1096 aaKnown RBP11.97□□□□□ -0.49
HMGB4-201ENST00000425537 UNC5CLQ8IV45 518 aa11.97□□□□□ -0.49
HMGB4-201ENST00000425537 FNBP4Q8N3X1 1017 aaPredicted RBP11.97□□□□□ -0.49
HMGB4-201ENST00000425537 CACNA1FO60840 1977 aa11.97□□□□□ -0.49
HMGB4-201ENST00000425537 COL5A2P05997 1499 aaPredicted RBP11.96□□□□□ -0.49
HMGB4-201ENST00000425537 ABCC4O15439 1325 aa11.96□□□□□ -0.49
HMGB4-201ENST00000425537 EVA1CP58658 441 aa11.96□□□□□ -0.49
HMGB4-201ENST00000425537 ZNF772Q68DY9 489 aaPredicted RBP11.96□□□□□ -0.49
HMGB4-201ENST00000425537 IL17REQ8NFR9 667 aa11.96□□□□□ -0.49
HMGB4-201ENST00000425537 A0A0G2JS52 829 aa11.95□□□□□ -0.5
HMGB4-201ENST00000425537 HSP90AB1P08238 724 aaKnown RBP11.95□□□□□ -0.5
HMGB4-201ENST00000425537 MYT1Q01538 1121 aa11.95□□□□□ -0.5
HMGB4-201ENST00000425537 TMEM57Q8N5G2 664 aa11.95□□□□□ -0.5
HMGB4-201ENST00000425537 RBM19Q9Y4C8 960 aaKnown RBP11.95□□□□□ -0.5
HMGB4-201ENST00000425537 RNMTO43148 476 aaKnown RBP11.94□□□□□ -0.5
HMGB4-201ENST00000425537 HDAC1Q13547 482 aaPredicted RBP11.94□□□□□ -0.5
HMGB4-201ENST00000425537 TRPC5Q9UL62 973 aaPredicted RBP11.94□□□□□ -0.5
HMGB4-201ENST00000425537 RGS12O14924 1447 aa11.94□□□□□ -0.5
HMGB4-201ENST00000425537 FAM98CQ17RN3 349 aaKnown RBP11.93□□□□□ -0.5
HMGB4-201ENST00000425537 INTS3Q68E01 1043 aaKnown RBP11.93□□□□□ -0.5
HMGB4-201ENST00000425537 ZBTB40Q9NUA8 1239 aa11.93□□□□□ -0.5
HMGB4-201ENST00000425537 KDM3BQ7LBC6 1761 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 WDR17Q8IZU2 1322 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 PARP4Q9UKK3 1724 aaKnown RBP11.92□□□□□ -0.5
HMGB4-201ENST00000425537 BTBD11A6QL63 1104 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 SLC4A2P04920 1241 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 RXRBP28702 533 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 CCT4P50991 539 aaKnown RBP11.92□□□□□ -0.5
HMGB4-201ENST00000425537 VPS72Q15906 364 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 TOM1L2Q6ZVM7 507 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 IFNL2Q8IZJ0 200 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 TNNQ9UQP3 1299 aa11.92□□□□□ -0.5
HMGB4-201ENST00000425537 ADAMTS7Q9UKP4 1686 aa11.91□□□□□ -0.5
HMGB4-201ENST00000425537 GJD4Q96KN9 370 aaPredicted RBP11.91□□□□□ -0.5
HMGB4-201ENST00000425537 MIS18AQ9NYP9 233 aa11.91□□□□□ -0.5
HMGB4-201ENST00000425537 PCDHB15Q9Y5E8 787 aa11.91□□□□□ -0.5
HMGB4-201ENST00000425537 BRWD3Q6RI45 1802 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 WNK3Q9BYP7 1800 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 SPATA31A5Q5VU36 1347 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 SPATA31A7Q8IWB4 1347 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 ZBTB7BO15156 539 aaPredicted RBP11.9□□□□□ -0.5
HMGB4-201ENST00000425537 IGHDP01880 384 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 FAM182BQ5T319 152 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 PKD1L3Q7Z443 1732 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 DCAF5Q96JK2 942 aa11.9□□□□□ -0.5
HMGB4-201ENST00000425537 VIRMAQ69YN4 1812 aaKnown RBP11.9□□□□□ -0.5
HMGB4-201ENST00000425537 SPATA31A1Q5TZJ5 1347 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 EIF4A1P60842 406 aaKnown RBP11.89□□□□□ -0.51
HMGB4-201ENST00000425537 RBM6P78332 1123 aaKnown RBP11.89□□□□□ -0.51
HMGB4-201ENST00000425537 HDGFL1Q5TGJ6 251 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 MPRIPQ6WCQ1 1025 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 GCC1Q96CN9 775 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 CARD10Q9BWT7 1032 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 LGR6Q9HBX8 967 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 SCN11AQ9UI33 1791 aa11.89□□□□□ -0.51
HMGB4-201ENST00000425537 PHKG2P15735 406 aa11.88□□□□□ -0.51
HMGB4-201ENST00000425537 PDE4AP27815 886 aa11.88□□□□□ -0.51
HMGB4-201ENST00000425537 KRT24Q2M2I5 525 aa11.88□□□□□ -0.51
HMGB4-201ENST00000425537 PXDNLA1KZ92 1463 aa11.88□□□□□ -0.51
HMGB4-201ENST00000425537 PCDH11XQ9BZA7 1347 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 PCDH11YQ9BZA8 1340 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 SIPA1L3O60292 1781 aaPredicted RBP11.87□□□□□ -0.51
HMGB4-201ENST00000425537 ANP32AP39687 249 aaKnown RBP11.87□□□□□ -0.51
HMGB4-201ENST00000425537 FLIIQ13045 1269 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 FAM161AQ3B820 660 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 RPAP2Q8IXW5 612 aaPredicted RBP11.87□□□□□ -0.51
HMGB4-201ENST00000425537 SEPT12Q8IYM1 358 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 BACH2Q9BYV9 841 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 ZBTB47Q9UFB7 747 aaPredicted RBP11.87□□□□□ -0.51
HMGB4-201ENST00000425537 HDAC5Q9UQL6 1122 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 THSD7AQ9UPZ6 1657 aa11.87□□□□□ -0.51
HMGB4-201ENST00000425537 MEGF6O75095 1541 aa11.86□□□□□ -0.51
HMGB4-201ENST00000425537 HMMRO75330 724 aa11.86□□□□□ -0.51
HMGB4-201ENST00000425537 GNAI3P08754 354 aa11.86□□□□□ -0.51
HMGB4-201ENST00000425537 IL2RBP14784 551 aa11.86□□□□□ -0.51
HMGB4-201ENST00000425537 RGS3P49796 1198 aa11.86□□□□□ -0.51
HMGB4-201ENST00000425537 FKBP5Q13451 457 aaPredicted RBP11.86□□□□□ -0.51
HMGB4-201ENST00000425537 SMC5Q8IY18 1101 aa11.86□□□□□ -0.51
HMGB4-201ENST00000425537 ZCRB1Q8TBF4 217 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms