RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 CCDC113Q9H0I3 377 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 TACC3Q9Y6A5 838 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 WDR46O15213 610 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 DTNBO60941 627 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 ATP2A2P16615 1042 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 LARP1Q6PKG0 1096 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 LMNTD2Q8IXW0 634 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 ZKSCAN1P17029 563 aaPredicted RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 RANBP1P43487 201 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 HDGFP51858 240 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 ZNF365Q70YC5 407 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 RIOK3O14730 519 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 CIB2O75838 187 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 PLEKHG5O94827 1062 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 CASQ1P31415 396 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 LRRC23Q53EV4 343 aaPredicted RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 BANK1Q8NDB2 785 aa5.31□□□□□ -1.56
PTPN13-202ENST00000411767 GFM2Q969S9 779 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 NAA15Q9BXJ9 866 aaKnown RBP5.31□□□□□ -1.56
PTPN13-202ENST00000411767 A0A1B0GUL7 405 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 LRSAM1Q6UWE0 723 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 VPS36Q86VN1 386 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PALM2Q8IXS6 379 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 TXNDC9O14530 226 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PYGLP06737 847 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PRPHP41219 470 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 ZNF397Q8NF99 534 aaPredicted RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PRKRIP1Q9H875 184 aaPredicted RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 CUL4BQ13620 913 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 WDR70Q9NW82 654 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 EFCAB14O75071 495 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 KRT83P78385 493 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 BZW1Q7L1Q6 419 aaKnown RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 KLHL34Q8N239 644 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 JAKMIP1Q96N16 626 aaKnown RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 LRRFIP2Q9Y608 721 aaKnown RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PATL1Q86TB9 770 aaKnown RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 FMNL3Q8IVF7 1028 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 SRCIN1Q9C0H9 1055 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 CTAGE8P0CG41 777 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PSMA4P25789 261 aaKnown RBP5.3□□□□□ -1.56
PTPN13-202ENST00000411767 PPP4R3AQ6IN85 833 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 NFXL1Q6ZNB6 911 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 CTAGE4Q8IX94 777 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 CCDC82Q8N4S0 544 aa5.3□□□□□ -1.56
PTPN13-202ENST00000411767 IVLP07476 585 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 UQCRHP07919 91 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 SF3B2Q13435 895 aaKnown RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 LGSNQ5TDP6 509 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 INTS3Q68E01 1043 aaKnown RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 FAM186BQ8IYM0 893 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 AFAP1L2Q8N4X5 818 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 THEGQ9P2T0 379 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 SEC63Q9UGP8 760 aaKnown RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 BCAP29Q9UHQ4 241 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ANGPTL3Q9Y5C1 460 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ST13P50502 369 aaKnown RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 PDXDC1Q6P996 788 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 TSG101Q99816 390 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ARHGEF9O43307 516 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 DDX42Q86XP3 938 aaKnown RBP eCLIP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 NEK1Q96PY6 1258 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 SLC38A10Q9HBR0 1119 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ZSCAN32Q9NX65 697 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 HSF2BPO75031 334 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ACTN2P35609 894 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 CCDC138Q96M89 665 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ZMYND15Q9H091 742 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 PAIP2BQ9ULR5 123 aaKnown RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 WHAMMP3Q1A5X7 153 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 TMCO5AQ8N6Q1 288 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ST13P5Q8NFI4 369 aaPredicted RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 RFWD2Q8NHY2 731 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 CTAGE5O15320 804 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 HOXC8P31273 242 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ARL1P40616 181 aaPredicted RBP5.29□□□□□ -1.56
PTPN13-202ENST00000411767 CCDC25Q86WR0 208 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 MTUS2Q5JR59 1369 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 ERCC3P19447 782 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 IRX4P78413 519 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 SPC24Q8NBT2 197 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 CCT6BQ92526 530 aa5.29□□□□□ -1.56
PTPN13-202ENST00000411767 CTNNA2P26232 953 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 CCDC83Q8IWF9 413 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 FNBP4Q8N3X1 1017 aaPredicted RBP5.28□□□□□ -1.56
PTPN13-202ENST00000411767 CCDC155Q8N6L0 562 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 VPS37AQ8NEZ2 397 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 DAPK3O43293 454 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 RRP9O43818 475 aaKnown RBP5.28□□□□□ -1.56
PTPN13-202ENST00000411767 SLC3A2P08195 630 aaKnown RBP5.28□□□□□ -1.56
PTPN13-202ENST00000411767 CCDC30Q5VVM6 783 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 IWS1Q96ST2 819 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 ESRRBO95718 433 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 NLRP9Q7RTR0 991 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 TRIM22Q8IYM9 498 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 TMEM57Q8N5G2 664 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 SERPINA10Q9UK55 444 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 GABPB2Q8TAK5 448 aaPredicted RBP5.28□□□□□ -1.56
PTPN13-202ENST00000411767 TNNC2P02585 160 aa5.28□□□□□ -1.56
PTPN13-202ENST00000411767 HELBQ8NG08 1087 aaPredicted RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms