RNA–Protein interactions for RNA: ENST00000389373.3

IFT88-203, Transcript of intraflagellar transport 88, humanhuman

TSL 4

Gene IFT88, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-203ENST00000389373 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
IFT88-203ENST00000389373 UBR3Q6ZT12 1888 aa13.53□□□□□ -0.24
IFT88-203ENST00000389373 PPM1GO15355 546 aaPredicted RBP13.53□□□□□ -0.24
IFT88-203ENST00000389373 PRELPP51888 382 aa13.53□□□□□ -0.24
IFT88-203ENST00000389373 NLGN1Q8N2Q7 840 aa13.53□□□□□ -0.24
IFT88-203ENST00000389373 PARP3Q9Y6F1 533 aa13.53□□□□□ -0.24
IFT88-203ENST00000389373 INSRP06213 1382 aa13.53□□□□□ -0.24
IFT88-203ENST00000389373 ST20-MTHFSA0A0A6YYL1 179 aa13.52□□□□□ -0.25
IFT88-203ENST00000389373 RBM42Q9BTD8 480 aaKnown RBP13.52□□□□□ -0.25
IFT88-203ENST00000389373 RNF181Q9P0P0 153 aa13.52□□□□□ -0.25
IFT88-203ENST00000389373 KDM2BQ8NHM5 1336 aa13.52□□□□□ -0.25
IFT88-203ENST00000389373 CICQ96RK0 1608 aaPredicted RBP13.52□□□□□ -0.25
IFT88-203ENST00000389373 WDR90Q96KV7 1748 aa13.52□□□□□ -0.25
IFT88-203ENST00000389373 N4BP2Q86UW6 1770 aaPredicted RBP13.52□□□□□ -0.25
IFT88-203ENST00000389373 NKX1-1Q15270 411 aaPredicted RBP13.51□□□□□ -0.25
IFT88-203ENST00000389373 ARHGEF1Q92888 912 aaKnown RBP13.51□□□□□ -0.25
IFT88-203ENST00000389373 ITGB4P16144 1822 aa13.5□□□□□ -0.25
IFT88-203ENST00000389373 FLT4P35916 1363 aa13.5□□□□□ -0.25
IFT88-203ENST00000389373 RFC4P35249 363 aa13.5□□□□□ -0.25
IFT88-203ENST00000389373 ATG3Q9NT62 314 aa13.5□□□□□ -0.25
IFT88-203ENST00000389373 PIM2Q9P1W9 311 aa13.5□□□□□ -0.25
IFT88-203ENST00000389373 EMILIN1Q9Y6C2 1016 aa13.5□□□□□ -0.25
IFT88-203ENST00000389373 KCPQ6ZWJ8 1503 aa13.49□□□□□ -0.25
IFT88-203ENST00000389373 GYS1P13807 737 aa13.49□□□□□ -0.25
IFT88-203ENST00000389373 KCNA3P22001 575 aa13.49□□□□□ -0.25
IFT88-203ENST00000389373 TESK2Q96S53 571 aa13.49□□□□□ -0.25
IFT88-203ENST00000389373 C10orf71Q711Q0 1435 aa13.48□□□□□ -0.25
IFT88-203ENST00000389373 PLEKHG2Q9H7P9 1386 aa13.48□□□□□ -0.25
IFT88-203ENST00000389373 HSPA1AP0DMV8 641 aaKnown RBP13.48□□□□□ -0.25
IFT88-203ENST00000389373 HSPA1BP0DMV9 641 aaKnown RBP13.48□□□□□ -0.25
IFT88-203ENST00000389373 DALRD3Q5D0E6 543 aaKnown RBP13.48□□□□□ -0.25
IFT88-203ENST00000389373 IFNL2Q8IZJ0 200 aa13.48□□□□□ -0.25
IFT88-203ENST00000389373 SMC1BQ8NDV3 1235 aa13.48□□□□□ -0.25
IFT88-203ENST00000389373 PHKG2P15735 406 aa13.47□□□□□ -0.25
IFT88-203ENST00000389373 CHRNA5P30532 468 aa13.46□□□□□ -0.25
IFT88-203ENST00000389373 DCAF5Q96JK2 942 aa13.46□□□□□ -0.25
IFT88-203ENST00000389373 EYA1Q99502 592 aa13.46□□□□□ -0.25
IFT88-203ENST00000389373 MAP2P11137 1827 aaKnown RBP13.46□□□□□ -0.26
IFT88-203ENST00000389373 SLC24A1O60721 1099 aa13.45□□□□□ -0.26
IFT88-203ENST00000389373 RPS6KA4O75676 772 aa13.45□□□□□ -0.26
IFT88-203ENST00000389373 ADRA2BP18089 450 aa13.45□□□□□ -0.26
IFT88-203ENST00000389373 RC3H1Q5TC82 1133 aaKnown RBP13.45□□□□□ -0.26
IFT88-203ENST00000389373 SLC4A9Q96Q91 983 aa13.45□□□□□ -0.26
IFT88-203ENST00000389373 TONSLQ96HA7 1378 aa13.45□□□□□ -0.26
IFT88-203ENST00000389373 KIAA1551Q9HCM1 1747 aa13.44□□□□□ -0.26
IFT88-203ENST00000389373 SRP68Q9UHB9 627 aaKnown RBP13.44□□□□□ -0.26
IFT88-203ENST00000389373 KIF24Q5T7B8 1368 aa13.44□□□□□ -0.26
IFT88-203ENST00000389373 KIF13BQ9NQT8 1826 aa13.43□□□□□ -0.26
IFT88-203ENST00000389373 RASSF7Q02833 373 aa13.43□□□□□ -0.26
IFT88-203ENST00000389373 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.43□□□□□ -0.263e-7■■■□□ 17.1
IFT88-203ENST00000389373 C4AP0C0L4 1744 aa13.42□□□□□ -0.26
IFT88-203ENST00000389373 PKD1L3Q7Z443 1732 aa13.42□□□□□ -0.26
IFT88-203ENST00000389373 PTCD1O75127 700 aaKnown RBP13.42□□□□□ -0.26
IFT88-203ENST00000389373 FKBP8Q14318 412 aa13.42□□□□□ -0.26
IFT88-203ENST00000389373 CNTNAP4Q9C0A0 1308 aa13.41□□□□□ -0.26
IFT88-203ENST00000389373 VEGFAP15692 232 aaPredicted RBP13.41□□□□□ -0.26
IFT88-203ENST00000389373 CABP4P57796 275 aa13.41□□□□□ -0.26
IFT88-203ENST00000389373 ERVV-2B6SEH9 535 aa13.4□□□□□ -0.26
IFT88-203ENST00000389373 CRKLP46109 303 aaKnown RBP13.4□□□□□ -0.26
IFT88-203ENST00000389373 DDR1Q08345 913 aa13.4□□□□□ -0.26
IFT88-203ENST00000389373 KDRP35968 1356 aa13.4□□□□□ -0.26
IFT88-203ENST00000389373 WASHC2AQ641Q2 1341 aa13.39□□□□□ -0.27
IFT88-203ENST00000389373 GLTPD2A6NH11 291 aa13.39□□□□□ -0.27
IFT88-203ENST00000389373 CARD14Q9BXL6 1004 aa13.39□□□□□ -0.27
IFT88-203ENST00000389373 HSP90AB1P08238 724 aaKnown RBP13.38□□□□□ -0.27
IFT88-203ENST00000389373 TNNT2P45379 298 aaPredicted RBP13.38□□□□□ -0.27
IFT88-203ENST00000389373 NCAPD2Q15021 1401 aa13.38□□□□□ -0.27
IFT88-203ENST00000389373 POLRMTO00411 1230 aaKnown RBP13.37□□□□□ -0.27
IFT88-203ENST00000389373 LMNB1P20700 586 aa13.37□□□□□ -0.27
IFT88-203ENST00000389373 EIF4A2Q14240 407 aaKnown RBP13.37□□□□□ -0.27
IFT88-203ENST00000389373 PLEKHO1Q53GL0 409 aaPredicted RBP13.37□□□□□ -0.27
IFT88-203ENST00000389373 ZNF530Q6P9A1 599 aaPredicted RBP13.37□□□□□ -0.27
IFT88-203ENST00000389373 POLKQ9UBT6 870 aa13.37□□□□□ -0.27
IFT88-203ENST00000389373 MKRN1Q9UHC7 482 aaKnown RBP13.37□□□□□ -0.27
IFT88-203ENST00000389373 USP42Q9H9J4 1324 aaKnown RBP13.37□□□□□ -0.27
IFT88-203ENST00000389373 ARFGEF1Q9Y6D6 1849 aa13.36□□□□□ -0.27
IFT88-203ENST00000389373 BRCA1P38398 1863 aaKnown RBP13.36□□□□□ -0.27
IFT88-203ENST00000389373 ZPR1O75312 459 aa13.36□□□□□ -0.27
IFT88-203ENST00000389373 CDCA8Q53HL2 280 aa13.36□□□□□ -0.27
IFT88-203ENST00000389373 USPL1Q5W0Q7 1092 aa13.36□□□□□ -0.27
IFT88-203ENST00000389373 TNRC6CQ9HCJ0 1690 aaKnown RBP13.36□□□□□ -0.27
IFT88-203ENST00000389373 KIF20BQ96Q89 1820 aa13.36□□□□□ -0.27
IFT88-203ENST00000389373 TM4SF1P30408 202 aa13.35□□□□□ -0.27
IFT88-203ENST00000389373 MTHFSP49914 203 aa13.35□□□□□ -0.27
IFT88-203ENST00000389373 DPY19L2Q6NUT2 758 aa13.35□□□□□ -0.27
IFT88-203ENST00000389373 POTEDQ86YR6 584 aa13.34□□□□□ -0.27
IFT88-203ENST00000389373 TTLL6Q8N841 843 aa13.34□□□□□ -0.27
IFT88-203ENST00000389373 NFATC2IPQ8NCF5 419 aa13.34□□□□□ -0.27
IFT88-203ENST00000389373 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
IFT88-203ENST00000389373 ZC3H4Q9UPT8 1303 aaKnown RBP13.34□□□□□ -0.27
IFT88-203ENST00000389373 C1orf141Q5JVX7 400 aa13.33□□□□□ -0.28
IFT88-203ENST00000389373 POLR3GLQ9BT43 218 aa13.33□□□□□ -0.28
IFT88-203ENST00000389373 POTECB2RU33 542 aa13.32□□□□□ -0.28
IFT88-203ENST00000389373 FOXN1O15353 648 aa13.32□□□□□ -0.28
IFT88-203ENST00000389373 INTS5Q6P9B9 1019 aaKnown RBP13.32□□□□□ -0.28
IFT88-203ENST00000389373 C2CD5Q86YS7 1000 aa13.32□□□□□ -0.28
IFT88-203ENST00000389373 SBF1O95248 1867 aa13.31□□□□□ -0.28
IFT88-203ENST00000389373 SERPINB2P05120 415 aa13.31□□□□□ -0.28
IFT88-203ENST00000389373 NFIXQ14938 502 aa13.31□□□□□ -0.28
IFT88-203ENST00000389373 AMOTQ4VCS5 1084 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms