RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 SIK1P57059 783 aa15.69■□□□□ 0.1
RTN3-204ENST00000354497 PUS7Q96PZ0 661 aaKnown RBP15.69■□□□□ 0.1
RTN3-204ENST00000354497 PXDNLA1KZ92 1463 aa15.69■□□□□ 0.1
RTN3-204ENST00000354497 FCHSD2O94868 740 aa15.68■□□□□ 0.1
RTN3-204ENST00000354497 ATP6V1AP38606 617 aa15.68■□□□□ 0.1
RTN3-204ENST00000354497 COL13A1Q5TAT6 717 aaPredicted RBP15.68■□□□□ 0.1
RTN3-204ENST00000354497 TMOD3Q9NYL9 352 aa15.68■□□□□ 0.1
RTN3-204ENST00000354497 WDR90Q96KV7 1748 aa15.67■□□□□ 0.1
RTN3-204ENST00000354497 INSRP06213 1382 aa15.67■□□□□ 0.1
RTN3-204ENST00000354497 ITGB4P16144 1822 aa15.67■□□□□ 0.1
RTN3-204ENST00000354497 FLT4P35916 1363 aa15.66■□□□□ 0.1
RTN3-204ENST00000354497 FYB1O15117 783 aa15.66■□□□□ 0.1
RTN3-204ENST00000354497 TGFB2P61812 414 aa15.66■□□□□ 0.1
RTN3-204ENST00000354497 ITPK1Q13572 414 aa15.66■□□□□ 0.1
RTN3-204ENST00000354497 RBM46Q8TBY0 533 aaKnown RBP15.66■□□□□ 0.1
RTN3-204ENST00000354497 KLRG1Q96E93 195 aa15.66■□□□□ 0.1
RTN3-204ENST00000354497 ZNF219Q9P2Y4 722 aaPredicted RBP15.66■□□□□ 0.1
RTN3-204ENST00000354497 N4BP2Q86UW6 1770 aaPredicted RBP15.66■□□□□ 0.1
RTN3-204ENST00000354497 DPEP1P16444 411 aa15.65■□□□□ 0.1
RTN3-204ENST00000354497 C9orf131Q5VYM1 1079 aa15.65■□□□□ 0.1
RTN3-204ENST00000354497 TNS4Q8IZW8 715 aa15.65■□□□□ 0.1
RTN3-204ENST00000354497 CCDC87Q9NVE4 849 aa15.65■□□□□ 0.1
RTN3-204ENST00000354497 ASAP1Q9ULH1 1129 aa15.65■□□□□ 0.1
RTN3-204ENST00000354497 SPG7Q9UQ90 795 aa15.65■□□□□ 0.1
RTN3-204ENST00000354497 ST20-MTHFSA0A0A6YYL1 179 aa15.64■□□□□ 0.09
RTN3-204ENST00000354497 PPM1GO15355 546 aaPredicted RBP15.64■□□□□ 0.09
RTN3-204ENST00000354497 TMF1P82094 1093 aa15.63■□□□□ 0.09
RTN3-204ENST00000354497 TRAPPC3LQ5T215 181 aa15.63■□□□□ 0.09
RTN3-204ENST00000354497 TESK2Q96S53 571 aa15.63■□□□□ 0.09
RTN3-204ENST00000354497 C10orf71Q711Q0 1435 aa15.63■□□□□ 0.09
RTN3-204ENST00000354497 TONSLQ96HA7 1378 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 ERICH6Q7L0X2 663 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 NLGN1Q8N2Q7 840 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 RTCBQ9Y3I0 505 aaKnown RBP15.62■□□□□ 0.09
RTN3-204ENST00000354497 EMILIN1Q9Y6C2 1016 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 PARP3Q9Y6F1 533 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 PKD1L3Q7Z443 1732 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 KIAA1551Q9HCM1 1747 aa15.62■□□□□ 0.09
RTN3-204ENST00000354497 PLEKHG2Q9H7P9 1386 aa15.61■□□□□ 0.09
RTN3-204ENST00000354497 ATXN8OSP0DMR3 200 aa15.61■□□□□ 0.09
RTN3-204ENST00000354497 NKX1-1Q15270 411 aaPredicted RBP15.61■□□□□ 0.09
RTN3-204ENST00000354497 RBM42Q9BTD8 480 aaKnown RBP15.61■□□□□ 0.09
RTN3-204ENST00000354497 KCPQ6ZWJ8 1503 aa15.61■□□□□ 0.09
RTN3-204ENST00000354497 KDM2BQ8NHM5 1336 aa15.61■□□□□ 0.09
RTN3-204ENST00000354497 MAP2P11137 1827 aaKnown RBP15.61■□□□□ 0.09
RTN3-204ENST00000354497 FSTL1Q12841 308 aa15.6■□□□□ 0.09
RTN3-204ENST00000354497 RNF181Q9P0P0 153 aa15.6■□□□□ 0.09
RTN3-204ENST00000354497 KIF13BQ9NQT8 1826 aa15.6■□□□□ 0.09
RTN3-204ENST00000354497 JMYQ8N9B5 988 aa15.6■□□□□ 0.09
RTN3-204ENST00000354497 RRAGCQ9HB90 399 aa15.6■□□□□ 0.09
RTN3-204ENST00000354497 ATG3Q9NT62 314 aa15.6■□□□□ 0.09
RTN3-204ENST00000354497 KIF20BQ96Q89 1820 aa15.59■□□□□ 0.09
RTN3-204ENST00000354497 KIF24Q5T7B8 1368 aa15.59■□□□□ 0.09
RTN3-204ENST00000354497 RFC4P35249 363 aa15.59■□□□□ 0.09
RTN3-204ENST00000354497 ARHGEF1Q92888 912 aaKnown RBP15.59■□□□□ 0.09
RTN3-204ENST00000354497 C4AP0C0L4 1744 aa15.58■□□□□ 0.08
RTN3-204ENST00000354497 SLC24A1O60721 1099 aa15.58■□□□□ 0.08
RTN3-204ENST00000354497 PHKG2P15735 406 aa15.58■□□□□ 0.08
RTN3-204ENST00000354497 IFNL2Q8IZJ0 200 aa15.58■□□□□ 0.08
RTN3-204ENST00000354497 GYS1P13807 737 aa15.57■□□□□ 0.08
RTN3-204ENST00000354497 PRELPP51888 382 aa15.57■□□□□ 0.08
RTN3-204ENST00000354497 DALRD3Q5D0E6 543 aaKnown RBP15.57■□□□□ 0.08
RTN3-204ENST00000354497 PIM2Q9P1W9 311 aa15.57■□□□□ 0.08
RTN3-204ENST00000354497 DSG3P32926 999 aa15.56■□□□□ 0.08
RTN3-204ENST00000354497 SMC1BQ8NDV3 1235 aa15.55■□□□□ 0.08
RTN3-204ENST00000354497 EYA1Q99502 592 aa15.55■□□□□ 0.08
RTN3-204ENST00000354497 KDRP35968 1356 aa15.55■□□□□ 0.08
RTN3-204ENST00000354497 KCNA3P22001 575 aa15.53■□□□□ 0.08
RTN3-204ENST00000354497 DCAF5Q96JK2 942 aa15.53■□□□□ 0.08
RTN3-204ENST00000354497 SLC4A9Q96Q91 983 aa15.53■□□□□ 0.08
RTN3-204ENST00000354497 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.53■□□□□ 0.08
RTN3-204ENST00000354497 NCAPD2Q15021 1401 aa15.53■□□□□ 0.08
RTN3-204ENST00000354497 RPS6KA4O75676 772 aa15.52■□□□□ 0.08
RTN3-204ENST00000354497 HSPA1AP0DMV8 641 aaKnown RBP15.52■□□□□ 0.08
RTN3-204ENST00000354497 HSPA1BP0DMV9 641 aaKnown RBP15.52■□□□□ 0.08
RTN3-204ENST00000354497 CHRNA5P30532 468 aa15.52■□□□□ 0.08
RTN3-204ENST00000354497 SRP68Q9UHB9 627 aaKnown RBP15.52■□□□□ 0.08
RTN3-204ENST00000354497 CNTNAP4Q9C0A0 1308 aa15.52■□□□□ 0.08
RTN3-204ENST00000354497 RC3H1Q5TC82 1133 aaKnown RBP15.51■□□□□ 0.07
RTN3-204ENST00000354497 TNRC6CQ9HCJ0 1690 aaKnown RBP15.51■□□□□ 0.07
RTN3-204ENST00000354497 BRCA1P38398 1863 aaKnown RBP15.51■□□□□ 0.07
RTN3-204ENST00000354497 ARFGEF1Q9Y6D6 1849 aa15.51■□□□□ 0.07
RTN3-204ENST00000354497 RASSF7Q02833 373 aa15.51■□□□□ 0.07
RTN3-204ENST00000354497 WASHC2AQ641Q2 1341 aa15.5■□□□□ 0.07
RTN3-204ENST00000354497 PTCD1O75127 700 aaKnown RBP15.5■□□□□ 0.07
RTN3-204ENST00000354497 CABP4P57796 275 aa15.5■□□□□ 0.07
RTN3-204ENST00000354497 FKBP8Q14318 412 aa15.5■□□□□ 0.07
RTN3-204ENST00000354497 ERVV-2B6SEH9 535 aa15.49■□□□□ 0.07
RTN3-204ENST00000354497 DDR1Q08345 913 aa15.49■□□□□ 0.07
RTN3-204ENST00000354497 CARD14Q9BXL6 1004 aa15.49■□□□□ 0.07
RTN3-204ENST00000354497 COL5A3P25940 1745 aaPredicted RBP15.48■□□□□ 0.07
RTN3-204ENST00000354497 ABCB7O75027 752 aa15.48■□□□□ 0.07
RTN3-204ENST00000354497 TNNT2P45379 298 aaPredicted RBP15.48■□□□□ 0.07
RTN3-204ENST00000354497 CDCA8Q53HL2 280 aa15.48■□□□□ 0.07
RTN3-204ENST00000354497 HSP90AB1P08238 724 aaKnown RBP15.47■□□□□ 0.07
RTN3-204ENST00000354497 CRKLP46109 303 aaKnown RBP15.47■□□□□ 0.07
RTN3-204ENST00000354497 USP42Q9H9J4 1324 aaKnown RBP15.46■□□□□ 0.07
RTN3-204ENST00000354497 EIF4A2Q14240 407 aaKnown RBP15.46■□□□□ 0.07
RTN3-204ENST00000354497 ZNF530Q6P9A1 599 aaPredicted RBP15.46■□□□□ 0.07
RTN3-204ENST00000354497 ANKRD26Q9UPS8 1709 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms