RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 VDRP11473 427 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 SPDYE4A6NLX3 237 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 TERF2Q15554 542 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 HOXC8P31273 242 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 SMARCE1Q969G3 411 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PIBF1Q8WXW3 757 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PDE3AQ14432 1141 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 CCAR2Q8N163 923 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 LOC102724159A0A0B4J2E5 919 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 KIF5BP33176 963 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PWP2Q15269 919 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 HELBQ8NG08 1087 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PSMA4P25789 261 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC159P0C7I6 412 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 ARMC9Q7Z3E5 817 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 RCAN3Q9UKA8 241 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 KANK1Q14678 1352 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 EIF2AQ9BY44 585 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 SMC2O95347 1197 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 TTC14Q96N46 770 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 MACROD2A1Z1Q3 448 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 ZFXP17010 805 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 CCT6AP40227 531 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 RPUSD2Q8IZ73 545 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 KIF5CO60282 957 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 RCSD1Q6JBY9 416 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PDLIM2Q96JY6 352 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 MAP3K5Q99683 1374 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 FRAT2O75474 233 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 SPAG9O60271 1321 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 NOL3O60936 208 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PPFIA2O75334 1257 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 FOXD1Q16676 465 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC57Q2TAC2 916 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 LMNTD2Q8IXW0 634 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 WWC2Q6AWC2 1192 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 LARSQ9P2J5 1176 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 PPP1R1BQ9UD71 204 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 LUC7L2Q9Y383 392 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 IQUBQ8NA54 791 aa4.38□□□□□ -1.71
SYNE2-202ENST00000344113 UTP6Q9NYH9 597 aaKnown RBP4.38□□□□□ -1.71
SYNE2-202ENST00000344113 TMF1P82094 1093 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC83Q8IWF9 413 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 CRACR2AQ9BSW2 395 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 ARHGAP25P42331 645 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 WHAMMP3Q1A5X7 153 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 MMS22LQ6ZRQ5 1243 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 PIP4K2AP48426 406 aaPredicted RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 ZNF428Q96B54 188 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 EIF3DO15371 548 aaKnown RBP eCLIP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 NUCB1Q02818 461 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 TACC1O75410 805 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 DCAF11Q8TEB1 546 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 SEC62Q99442 399 aaKnown RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 CD151P48509 253 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 USP6NLQ92738 828 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 STMN4Q9H169 189 aaPredicted RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 ZBTB12Q9Y330 459 aaPredicted RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 VIMP08670 466 aaKnown RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 AIMP1Q12904 312 aaKnown RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 CFAP61Q8NHU2 1237 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 CYTH3O43739 400 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 SLC8A3P57103 927 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 MAP7D1Q3KQU3 841 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 POLR3CQ9BUI4 534 aaPredicted RBP4.37□□□□□ -1.71
SYNE2-202ENST00000344113 THEGQ9P2T0 379 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 C21orf2O43822 256 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 ARMC2Q8NEN0 867 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 SPTLC3Q9NUV7 552 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 ZBED4O75132 1171 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 NCAPD3P42695 1498 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 TXLNAP40222 546 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 KCNJ6P48051 423 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 CNTLNQ9NXG0 1405 aa4.37□□□□□ -1.71
SYNE2-202ENST00000344113 RBM33Q96EV2 1170 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 OSBPL9Q96SU4 736 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC192P0DO97 292 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 IBSPP21815 317 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 GSCP56915 257 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 IMMTQ16891 758 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 PDE6BP35913 854 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 RRP1P56182 461 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ZNF365Q70YC5 407 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 IQSEC3Q9UPP2 1182 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ODF2Q5BJF6 829 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 RINLQ6ZS11 566 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 SMC6Q96SB8 1091 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 EHBP1Q8NDI1 1231 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ZC4H2Q9NQZ6 224 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ABLIM1O14639 778 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 SLC4A8Q2Y0W8 1093 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC174Q6PII3 467 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ZNF397Q8NF99 534 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 DHX57Q6P158 1386 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CEP85LQ5SZL2 805 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 PLEKHH1Q9ULM0 1364 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 EBAG9O00559 213 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms