RNA–Protein interactions for RNA: ENST00000338508.8

SHANK2-201, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 5 BASIC

Gene SHANK2, Length 7,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-201ENST00000338508 HOOK3Q86VS8 718 aa13.74□□□□□ -0.21
SHANK2-201ENST00000338508 RAD54L2Q9Y4B4 1467 aa13.74□□□□□ -0.21
SHANK2-201ENST00000338508 TMCO3Q6UWJ1 677 aa13.74□□□□□ -0.21
SHANK2-201ENST00000338508 DZIP1Q86YF9 867 aaKnown RBP13.74□□□□□ -0.21
SHANK2-201ENST00000338508 RANBP6O60518 1105 aaKnown RBP13.74□□□□□ -0.21
SHANK2-201ENST00000338508 VAT1LQ9HCJ6 419 aa13.74□□□□□ -0.21
SHANK2-201ENST00000338508 CPLX3Q8WVH0 158 aa13.73□□□□□ -0.21
SHANK2-201ENST00000338508 SRCIN1Q9C0H9 1055 aa13.73□□□□□ -0.21
SHANK2-201ENST00000338508 PRPF4BQ13523 1007 aaKnown RBP13.73□□□□□ -0.21
SHANK2-201ENST00000338508 WWC3Q9ULE0 1092 aa13.73□□□□□ -0.21
SHANK2-201ENST00000338508 IMMTQ16891 758 aaKnown RBP13.73□□□□□ -0.21
SHANK2-201ENST00000338508 NUP62CLQ9H1M0 184 aa13.73□□□□□ -0.21
SHANK2-201ENST00000338508 WDR33Q9C0J8 1336 aaKnown RBP13.73□□□□□ -0.21
SHANK2-201ENST00000338508 CRACR2AQ9BSW2 395 aa13.73□□□□□ -0.21
SHANK2-201ENST00000338508 LUZP1Q86V48 1076 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 CCDC144CPQ8IYA2 1237 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 TSG101Q99816 390 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 SAMM50Q9Y512 469 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 TERF1P54274 439 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 PABPN1LA6NDY0 278 aaKnown RBP13.72□□□□□ -0.21
SHANK2-201ENST00000338508 FERMT3Q86UX7 667 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 CDK19Q9BWU1 502 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 FANCD2Q9BXW9 1451 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 LMAN1P49257 510 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 RNF187Q5TA31 235 aaPredicted RBP13.72□□□□□ -0.21
SHANK2-201ENST00000338508 CASQ1P31415 396 aa13.72□□□□□ -0.21
SHANK2-201ENST00000338508 MTERF4Q7Z6M4 381 aaKnown RBP13.72□□□□□ -0.21
SHANK2-201ENST00000338508 CAVIN4Q5BKX8 364 aa13.71□□□□□ -0.21
SHANK2-201ENST00000338508 CUL5Q93034 780 aa13.71□□□□□ -0.21
SHANK2-201ENST00000338508 TDRD12Q587J7 1177 aaKnown RBP13.71□□□□□ -0.21
SHANK2-201ENST00000338508 ZNF644Q9H582 1327 aaPredicted RBP13.71□□□□□ -0.21
SHANK2-201ENST00000338508 RUSC2Q8N2Y8 1516 aa13.71□□□□□ -0.21
SHANK2-201ENST00000338508 CCT4P50991 539 aaKnown RBP13.71□□□□□ -0.21
SHANK2-201ENST00000338508 MAP3K9P80192 1104 aa13.71□□□□□ -0.21
SHANK2-201ENST00000338508 ZNF444Q8N0Y2 327 aaPredicted RBP13.71□□□□□ -0.21
SHANK2-201ENST00000338508 LARP6Q9BRS8 491 aaKnown RBP13.71□□□□□ -0.22
SHANK2-201ENST00000338508 CEP131Q9UPN4 1083 aa13.71□□□□□ -0.22
SHANK2-201ENST00000338508 FKBP15Q5T1M5 1219 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 TOP2AP11388 1531 aaKnown RBP13.7□□□□□ -0.22
SHANK2-201ENST00000338508 FEZ1Q99689 392 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 ZFP91Q96JP5 570 aaPredicted RBP13.7□□□□□ -0.22
SHANK2-201ENST00000338508 SRRTQ9BXP5 876 aaKnown RBP13.7□□□□□ -0.22
SHANK2-201ENST00000338508 SMTNL1A8MU46 457 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 K7ELQ4 463 aaPredicted RBP13.7□□□□□ -0.22
SHANK2-201ENST00000338508 CTNNA3Q9UI47 895 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 TCERG1LQ5VWI1 586 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 MPRIPQ6WCQ1 1025 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 APBB1IPQ7Z5R6 666 aaPredicted RBP13.7□□□□□ -0.22
SHANK2-201ENST00000338508 PPM1EQ8WY54 764 aa13.7□□□□□ -0.22
SHANK2-201ENST00000338508 CFAP70Q5T0N1 1121 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 ISM2Q6H9L7 571 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 CCDC83Q8IWF9 413 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 C11orf95C9JLR9 678 aaPredicted RBP13.69□□□□□ -0.22
SHANK2-201ENST00000338508 RPGRQ92834 1020 aaKnown RBP13.69□□□□□ -0.22
SHANK2-201ENST00000338508 TRERF1Q96PN7 1200 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 CABP1Q9NZU7 370 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 GCC1Q96CN9 775 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 NUP88Q99567 741 aaPredicted RBP13.69□□□□□ -0.22
SHANK2-201ENST00000338508 BOLA2Q9H3K6 86 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 PRKCSHP14314 528 aaPredicted RBP13.69□□□□□ -0.22
SHANK2-201ENST00000338508 WASF1Q92558 559 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 STARD3NLO95772 234 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 SPECC1Q5M775 1068 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 PRDM10Q9NQV6 1147 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 SSX2IPQ9Y2D8 614 aa13.69□□□□□ -0.22
SHANK2-201ENST00000338508 PPFIA3O75145 1194 aa13.68□□□□□ -0.22
SHANK2-201ENST00000338508 POLR3GO15318 223 aaPredicted RBP13.68□□□□□ -0.22
SHANK2-201ENST00000338508 SYCP3Q8IZU3 236 aa13.68□□□□□ -0.22
SHANK2-201ENST00000338508 PRC1O43663 620 aa13.68□□□□□ -0.22
SHANK2-201ENST00000338508 NAPBQ9H115 298 aa13.68□□□□□ -0.22
SHANK2-201ENST00000338508 HLTFQ14527 1009 aaKnown RBP eCLIP13.68□□□□□ -0.221e-6■■■□□ 17.8
SHANK2-201ENST00000338508 SMARCA5O60264 1052 aaPredicted RBP13.68□□□□□ -0.22
SHANK2-201ENST00000338508 SYCE3A1L190 88 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 C6orf229H3BNL8 230 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 UBXN4Q92575 508 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 KIF20AO95235 890 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 NOP2P46087 812 aaKnown RBP13.67□□□□□ -0.22
SHANK2-201ENST00000338508 KIF4BQ2VIQ3 1234 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 MYD88Q99836 296 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 ZNF287Q9HBT7 754 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 OTUD6BQ8N6M0 293 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 ZBTB9Q96C00 473 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 BICD1Q96G01 975 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 EXOC6BQ9Y2D4 811 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 SHTN1A0MZ66 631 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 NLRP5P59047 1200 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 DPH6Q7L8W6 267 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 RGS22Q8NE09 1264 aa13.67□□□□□ -0.22
SHANK2-201ENST00000338508 TRMT1Q9NXH9 659 aaKnown RBP13.67□□□□□ -0.22
SHANK2-201ENST00000338508 URI1O94763 535 aaPredicted RBP13.66□□□□□ -0.22
SHANK2-201ENST00000338508 IL27Q8NEV9 243 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 SLC12A5Q9H2X9 1139 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 ZNF652Q9Y2D9 606 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 FERP16591 822 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 USHBP1Q8N6Y0 703 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 FANCIQ9NVI1 1328 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 CCT2P78371 535 aaKnown RBP13.66□□□□□ -0.22
SHANK2-201ENST00000338508 VPS36Q86VN1 386 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 GRPEL1Q9HAV7 217 aa13.66□□□□□ -0.22
SHANK2-201ENST00000338508 CHD1LQ86WJ1 897 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms