RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PANK2Q9BZ23 570 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 DISP3Q9P2K9 1392 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 STX6O43752 255 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 CCDC148Q8NFR7 591 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 NSD2O96028 1365 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 ABCA10Q8WWZ4 1543 aa15.05■□□□□ -0
COL3A1-201ENST00000304636 ZNF530Q6P9A1 599 aaPredicted RBP15.04■□□□□ -0
COL3A1-201ENST00000304636 IFT140Q96RY7 1462 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 PTPRCP08575 1304 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 KIF6Q6ZMV9 814 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 PAXBP1Q9Y5B6 917 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 CAVIN2O95810 425 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 URI1O94763 535 aaPredicted RBP15.04■□□□□ -0
COL3A1-201ENST00000304636 CASQ1P31415 396 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 CUL7Q14999 1698 aa15.04■□□□□ -0
COL3A1-201ENST00000304636 HS1BP3Q53T59 392 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 CNNM1Q9NRU3 951 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 GNAT3A8MTJ3 354 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 CKAP2LQ8IYA6 745 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 GDPD2Q9HCC8 539 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 GOLGA6L7A0A1B0GV03 622 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 PCDHB15Q9Y5E8 787 aa15.03■□□□□ -0
COL3A1-201ENST00000304636 KIAA0586Q9BVV6 1533 aa15.02■□□□□ -0
COL3A1-201ENST00000304636 IQGAP2Q13576 1575 aa15.02■□□□□ -0
COL3A1-201ENST00000304636 FAM193AP78312 1265 aa15.02■□□□□ -0
COL3A1-201ENST00000304636 FBXO3Q9UK99 471 aa15.02■□□□□ -0
COL3A1-201ENST00000304636 CEP131Q9UPN4 1083 aa15.02■□□□□ -0
COL3A1-201ENST00000304636 HMGB1P09429 215 aaKnown RBP15.02■□□□□ -0
COL3A1-201ENST00000304636 IMMTQ16891 758 aaKnown RBP15.02■□□□□ -0
COL3A1-201ENST00000304636 U3KPZ7 1027 aaPredicted RBP15.02■□□□□ -0
COL3A1-201ENST00000304636 TOP1P11387 765 aaKnown RBP15.02□□□□□ -0.01
COL3A1-201ENST00000304636 RBM33Q96EV2 1170 aaKnown RBP15.02□□□□□ -0.01
COL3A1-201ENST00000304636 ZKSCAN5Q9Y2L8 839 aa15.02□□□□□ -0.01
COL3A1-201ENST00000304636 CTDP1Q9Y5B0 961 aaPredicted RBP15.02□□□□□ -0.01
COL3A1-201ENST00000304636 KIF5CO60282 957 aa15.02□□□□□ -0.01
COL3A1-201ENST00000304636 MCM10Q7L590 875 aa15.02□□□□□ -0.01
COL3A1-201ENST00000304636 CRACR2AQ9BSW2 395 aa15.02□□□□□ -0.01
COL3A1-201ENST00000304636 FKBP4Q02790 459 aaKnown RBP eCLIP15.01□□□□□ -0.01
COL3A1-201ENST00000304636 PARD3Q8TEW0 1356 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 BTBD11A6QL63 1104 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 MCM3P25205 808 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 MAP9Q49MG5 647 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 HSP90AB3PQ58FF7 597 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 MAGI1Q96QZ7 1491 aaPredicted RBP15.01□□□□□ -0.01
COL3A1-201ENST00000304636 GJB2P29033 226 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 STX1AQ16623 288 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 MTMR7Q9Y216 660 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 RALGAPBQ86X10 1494 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 NOLC1Q14978 699 aaKnown RBP eCLIP15.01□□□□□ -0.01
COL3A1-201ENST00000304636 ARHGAP45Q92619 1136 aa15.01□□□□□ -0.01
COL3A1-201ENST00000304636 TATP17735 454 aaPredicted RBP15□□□□□ -0.01
COL3A1-201ENST00000304636 ARHGEF11O15085 1522 aa15□□□□□ -0.01
COL3A1-201ENST00000304636 KIAA1328Q86T90 577 aa15□□□□□ -0.01
COL3A1-201ENST00000304636 CCDC57Q2TAC2 916 aa15□□□□□ -0.01
COL3A1-201ENST00000304636 NUP133Q8WUM0 1156 aa15□□□□□ -0.01
COL3A1-201ENST00000304636 TRMT1Q9NXH9 659 aaKnown RBP15□□□□□ -0.01
COL3A1-201ENST00000304636 ZHX1Q9UKY1 873 aaPredicted RBP15□□□□□ -0.01
COL3A1-201ENST00000304636 TMX3Q96JJ7 454 aa15□□□□□ -0.01
COL3A1-201ENST00000304636 LRRFIP2Q9Y608 721 aaKnown RBP15□□□□□ -0.01
COL3A1-201ENST00000304636 BMS1Q14692 1282 aaKnown RBP15□□□□□ -0.01
COL3A1-201ENST00000304636 SMC5Q8IY18 1101 aa15□□□□□ -0.01
COL3A1-201ENST00000304636 GNL3LQ9NVN8 582 aaKnown RBP15□□□□□ -0.01
COL3A1-201ENST00000304636 RAB3GAP1Q15042 981 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 JAKMIP3Q5VZ66 844 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 CEP135Q66GS9 1140 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 MIS18AQ9NYP9 233 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 CEP126Q9P2H0 1117 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 MRC2Q9UBG0 1479 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 ZNF165P49910 485 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 SHTN1A0MZ66 631 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 KRT18P05783 430 aaKnown RBP14.99□□□□□ -0.01
COL3A1-201ENST00000304636 HCLS1P14317 486 aaPredicted RBP14.99□□□□□ -0.01
COL3A1-201ENST00000304636 MYL6BP14649 208 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 OSCARQ8IYS5 282 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 TANGO6Q9C0B7 1094 aa14.99□□□□□ -0.01
COL3A1-201ENST00000304636 SPDYE4A6NLX3 237 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 POTEB2H3BUK9 544 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 ZFYVE27Q5T4F4 411 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 CCDC61Q9Y6R9 512 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 STK11IPQ8N1F8 1099 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 CCDC171Q6TFL3 1326 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 EIF5P55010 431 aaKnown RBP14.98□□□□□ -0.01
COL3A1-201ENST00000304636 KIF4BQ2VIQ3 1234 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 SNAPC4Q5SXM2 1469 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 ZSCAN22P10073 491 aaPredicted RBP14.98□□□□□ -0.01
COL3A1-201ENST00000304636 SNW1Q13573 536 aaKnown RBP14.98□□□□□ -0.01
COL3A1-201ENST00000304636 SYCP1Q15431 976 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 CENPHQ9H3R5 247 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 NESP48681 1621 aa14.98□□□□□ -0.01
COL3A1-201ENST00000304636 GOLGA6L9A6NEM1 432 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 C8orf76Q96K31 380 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 FAM135AQ9P2D6 1515 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 POLR3GO15318 223 aaPredicted RBP14.97□□□□□ -0.01
COL3A1-201ENST00000304636 UBAC1Q9BSL1 405 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 NUDT16Q96DE0 195 aaKnown RBP14.97□□□□□ -0.01
COL3A1-201ENST00000304636 F6X3S4 739 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 ATF3P18847 181 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 ESCO1Q5FWF5 840 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 FSIP1Q8NA03 581 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 ZNF397Q8NF99 534 aaPredicted RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms