RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PPP1R12CQ9BZL4 782 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 DACH1Q9UI36 760 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 LAMC3Q9Y6N6 1575 aa6.82□□□□□ -1.32
CD44-202ENST00000278385 PALM3A6NDB9 673 aaPredicted RBP6.82□□□□□ -1.32
CD44-202ENST00000278385 BRD2P25440 801 aaKnown RBP6.82□□□□□ -1.32
CD44-202ENST00000278385 LMOD1P29536 600 aaPredicted RBP6.82□□□□□ -1.32
CD44-202ENST00000278385 SCTRP47872 440 aa6.82□□□□□ -1.32
CD44-202ENST00000278385 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.82□□□□□ -1.32
CD44-202ENST00000278385 TBC1D9Q6ZT07 1266 aa6.82□□□□□ -1.32
CD44-202ENST00000278385 PLEKHM2Q8IWE5 1019 aa6.82□□□□□ -1.32
CD44-202ENST00000278385 DEPDC4Q8N2C3 294 aa6.82□□□□□ -1.32
CD44-202ENST00000278385 INSM2Q96T92 566 aaPredicted RBP6.82□□□□□ -1.32
CD44-202ENST00000278385 CHIC2Q9UKJ5 165 aa6.82□□□□□ -1.32
CD44-202ENST00000278385 A0A1W2PRU2 124 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 BACH1O14867 736 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 GPC1P35052 558 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 GTF2IP78347 998 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 TSGA10IPQ3SY00 556 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 RETREG2Q8NC44 543 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 ADAMTS19Q8TE59 1207 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 OSBPL3Q9H4L5 887 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 VRTNQ9H8Y1 702 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 ARHGEF10LQ9HCE6 1279 aa6.81□□□□□ -1.32
CD44-202ENST00000278385 MKRN1Q9UHC7 482 aaKnown RBP6.81□□□□□ -1.32
CD44-202ENST00000278385 RFX1P22670 979 aa6.8□□□□□ -1.32
CD44-202ENST00000278385 CLN3Q13286 438 aa6.8□□□□□ -1.32
CD44-202ENST00000278385 TMEM214Q6NUQ4 689 aaKnown RBP6.8□□□□□ -1.32
CD44-202ENST00000278385 FAM177A1Q8N128 213 aaPredicted RBP6.8□□□□□ -1.32
CD44-202ENST00000278385 CNKSR1Q969H4 720 aa6.8□□□□□ -1.32
CD44-202ENST00000278385 WIZO95785 1651 aa6.8□□□□□ -1.32
CD44-202ENST00000278385 FIGNL2A6NMB9 653 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 RASA1P20936 1047 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 GNASQ5JWF2 1037 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 LYSMD3Q7Z3D4 306 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 ESYT1Q9BSJ8 1104 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 RAB6BQ9NRW1 208 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 DNAAF2Q9NVR5 837 aaKnown RBP6.79□□□□□ -1.32
CD44-202ENST00000278385 AMOTL2Q9Y2J4 779 aa6.79□□□□□ -1.32
CD44-202ENST00000278385 MAFBQ9Y5Q3 323 aaPredicted RBP6.79□□□□□ -1.32
CD44-202ENST00000278385 SOS2Q07890 1332 aaPredicted RBP6.78□□□□□ -1.32
CD44-202ENST00000278385 RNF144AP50876 292 aaPredicted RBP6.78□□□□□ -1.32
CD44-202ENST00000278385 GDF10P55107 478 aa6.78□□□□□ -1.32
CD44-202ENST00000278385 SLC16A10Q8TF71 515 aa6.78□□□□□ -1.32
CD44-202ENST00000278385 UCN2Q96RP3 112 aa6.78□□□□□ -1.32
CD44-202ENST00000278385 ZSCAN10Q96SZ4 725 aaPredicted RBP6.78□□□□□ -1.32
CD44-202ENST00000278385 CHMP3Q9Y3E7 222 aa6.78□□□□□ -1.32
CD44-202ENST00000278385 SNRPBP14678 240 aaKnown RBP6.77□□□□□ -1.33
CD44-202ENST00000278385 CTSOP43234 321 aaPredicted RBP6.77□□□□□ -1.33
CD44-202ENST00000278385 TLR1Q15399 786 aa6.77□□□□□ -1.33
CD44-202ENST00000278385 PRICKLE2Q7Z3G6 844 aa6.77□□□□□ -1.33
CD44-202ENST00000278385 LARGE2Q8N3Y3 721 aa6.77□□□□□ -1.33
CD44-202ENST00000278385 OGFOD1Q8N543 542 aa6.77□□□□□ -1.33
CD44-202ENST00000278385 NBPF15Q8N660 670 aa6.77□□□□□ -1.33
CD44-202ENST00000278385 CFTRP13569 1480 aa6.77□□□□□ -1.33
CD44-202ENST00000278385 ACIN1Q9UKV3 1341 aaKnown RBP6.76□□□□□ -1.33
CD44-202ENST00000278385 TOP2AP11388 1531 aaKnown RBP6.76□□□□□ -1.33
CD44-202ENST00000278385 INHAP05111 366 aa6.76□□□□□ -1.33
CD44-202ENST00000278385 CCDC102BQ68D86 513 aa6.76□□□□□ -1.33
CD44-202ENST00000278385 DHX37Q8IY37 1157 aaKnown RBP6.76□□□□□ -1.33
CD44-202ENST00000278385 TPCN2Q8NHX9 752 aa6.76□□□□□ -1.33
CD44-202ENST00000278385 XAGE2Q96GT9 111 aa6.76□□□□□ -1.33
CD44-202ENST00000278385 SERTAD1Q9UHV2 236 aa6.76□□□□□ -1.33
CD44-202ENST00000278385 LCE2BO14633 110 aa6.75□□□□□ -1.33
CD44-202ENST00000278385 CENPCQ03188 943 aa6.75□□□□□ -1.33
CD44-202ENST00000278385 ZNF594Q96JF6 807 aaPredicted RBP6.75□□□□□ -1.33
CD44-202ENST00000278385 POTECB2RU33 542 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 PATL2C9JE40 543 aaKnown RBP6.74□□□□□ -1.33
CD44-202ENST00000278385 TAS1R3Q7RTX0 852 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 RNF217Q8TC41 542 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 UBE2Q2Q8WVN8 375 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 POLR3GLQ9BT43 218 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 ETNK1Q9HBU6 452 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 DNMT3LQ9UJW3 386 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 PCDHGA11Q9Y5H2 935 aa6.74□□□□□ -1.33
CD44-202ENST00000278385 FANCD2Q9BXW9 1451 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 MRC2Q9UBG0 1479 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 WASLO00401 505 aaPredicted RBP6.73□□□□□ -1.33
CD44-202ENST00000278385 IL2RAP01589 272 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 SMTNP53814 917 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 SEC13P55735 322 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 HINFPQ9BQA5 517 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 NIFKQ9BYG3 293 aaKnown RBP6.73□□□□□ -1.33
CD44-202ENST00000278385 NXF1Q9UBU9 619 aaKnown RBP6.73□□□□□ -1.33
CD44-202ENST00000278385 CEP164Q9UPV0 1460 aa6.73□□□□□ -1.33
CD44-202ENST00000278385 A6NJY4 79 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 FAM196BA6NMK8 535 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 SOBPA7XYQ1 873 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 POU4F2Q12837 409 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 WDR44Q5JSH3 913 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 FOXR1Q6PIV2 292 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 NPAS3Q8IXF0 933 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 KDF1Q8NAX2 398 aaPredicted RBP6.72□□□□□ -1.33
CD44-202ENST00000278385 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.72□□□□□ -1.33
CD44-202ENST00000278385 FAM200AQ8TCP9 573 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 GRIP2Q9C0E4 1043 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 TIMMDC1Q9NPL8 285 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 CCDC88BA6NC98 1476 aa6.72□□□□□ -1.33
CD44-202ENST00000278385 THOC2Q8NI27 1593 aaKnown RBP6.71□□□□□ -1.34
CD44-202ENST00000278385 CSB-PGBD3P0DP91 1061 aa6.71□□□□□ -1.34
CD44-202ENST00000278385 PTSQ03393 145 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms