Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 CKBP1-201ENST00000565489 1086 ntBASIC17.41■□□□□ 0.38
UBQLN3Q9H347 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.41■□□□□ 0.38
UBQLN3Q9H347 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 FP475955.4-201ENST00000623131 1990 ntBASIC17.4■□□□□ 0.38
UBQLN3Q9H347 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 KRT18P22-201ENST00000402024 1347 ntBASIC17.4■□□□□ 0.38
UBQLN3Q9H347 AL031598.1-201ENST00000561511 1773 ntBASIC17.4■□□□□ 0.38
UBQLN3Q9H347 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.4■□□□□ 0.38
UBQLN3Q9H347 KRT8P11-201ENST00000409686 1436 ntBASIC17.39■□□□□ 0.38
UBQLN3Q9H347 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.39■□□□□ 0.38
UBQLN3Q9H347 AC104581.1-202ENST00000635932 2618 ntBASIC17.39■□□□□ 0.37
UBQLN3Q9H347 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 AC020763.4-201ENST00000623414 4170 ntBASIC17.39■□□□□ 0.37
UBQLN3Q9H347 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 FAM210CP-201ENST00000445714 574 ntBASIC17.39■□□□□ 0.37
UBQLN3Q9H347 PRSS44-201ENST00000515154 1146 ntBASIC17.39■□□□□ 0.37
UBQLN3Q9H347 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.39■□□□□ 0.37
UBQLN3Q9H347 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBQLN3Q9H347 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
UBQLN3Q9H347 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBQLN3Q9H347 IRX1P1-201ENST00000438849 1838 ntBASIC17.38■□□□□ 0.37
UBQLN3Q9H347 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UBQLN3Q9H347 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms