Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.23■□□□□ 0.35
TIMP4Q99727 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.23■□□□□ 0.35
TIMP4Q99727 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
TIMP4Q99727 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
TIMP4Q99727 AC007663.1-201ENST00000438948 1240 ntBASIC17.23■□□□□ 0.35
TIMP4Q99727 ATP5G1P1-201ENST00000448724 379 ntBASIC17.23■□□□□ 0.35
TIMP4Q99727 TSPY17P-201ENST00000450329 467 ntBASIC17.23■□□□□ 0.35
TIMP4Q99727 CA15P1-201ENST00000481698 905 ntBASIC17.23■□□□□ 0.35
TIMP4Q99727 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.23■□□□□ 0.35
TIMP4Q99727 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.23■□□□□ 0.35
TIMP4Q99727 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
TIMP4Q99727 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 AL023803.3-201ENST00000615559 522 ntBASIC17.23■□□□□ 0.35
TIMP4Q99727 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.23■□□□□ 0.35
TIMP4Q99727 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 AC092338.2-201ENST00000568827 1415 ntBASIC17.22■□□□□ 0.35
TIMP4Q99727 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.22■□□□□ 0.35
TIMP4Q99727 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.22■□□□□ 0.35
TIMP4Q99727 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TIMP4Q99727 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 HMGA1P5-201ENST00000412453 271 ntBASIC17.22■□□□□ 0.35
TIMP4Q99727 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TIMP4Q99727 PRSS44-201ENST00000515154 1146 ntBASIC17.22■□□□□ 0.35
TIMP4Q99727 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 AL353719.1-201ENST00000566847 864 ntBASIC17.22■□□□□ 0.35
TIMP4Q99727 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TIMP4Q99727 AC010653.2-201ENST00000623505 997 ntBASIC17.22■□□□□ 0.35
TIMP4Q99727 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
TIMP4Q99727 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.22■□□□□ 0.35
TIMP4Q99727 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.22■□□□□ 0.35
TIMP4Q99727 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TIMP4Q99727 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TIMP4Q99727 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.21■□□□□ 0.35
TIMP4Q99727 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 AC135050.7-201ENST00000624508 2218 ntBASIC17.21■□□□□ 0.35
TIMP4Q99727 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.21■□□□□ 0.35
TIMP4Q99727 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.21■□□□□ 0.35
TIMP4Q99727 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.21■□□□□ 0.35
TIMP4Q99727 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TIMP4Q99727 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 AL049597.2-201ENST00000565575 961 ntBASIC17.21■□□□□ 0.35
TIMP4Q99727 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
TIMP4Q99727 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.21■□□□□ 0.35
TIMP4Q99727 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TIMP4Q99727 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TIMP4Q99727 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.21■□□□□ 0.34
TIMP4Q99727 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.2■□□□□ 0.34
TIMP4Q99727 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TIMP4Q99727 AC093525.10-201ENST00000625130 1569 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms