Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 KRT18P57-201ENST00000443599 1254 ntBASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 FAM210CP-201ENST00000445714 574 ntBASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 AL512604.3-201ENST00000569583 964 ntBASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 AC092865.7-201ENST00000641832 219 ntBASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD1Q96NR3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 GPAT2P1-201ENST00000444924 1672 ntBASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 AL512353.2-201ENST00000448759 1962 ntBASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 AL049812.1-201ENST00000432563 2267 ntBASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 RN7SL850P-201ENST00000579959 291 ntBASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 AC073508.3-201ENST00000619697 1419 ntBASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD1Q96NR3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 KRT8P45-201ENST00000414328 1447 ntBASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 AL023284.2-201ENST00000405850 579 ntBASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 TMPOP1-202ENST00000424642 1267 ntBASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 MIR4674-201ENST00000582457 87 ntBASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms