Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 UNC93B2-201ENST00000285383 730 ntBASIC17.99■□□□□ 0.47
VMP1Q96GC9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VMP1Q96GC9 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.99■□□□□ 0.47
VMP1Q96GC9 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VMP1Q96GC9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.98■□□□□ 0.47
VMP1Q96GC9 B3GAT3P1-201ENST00000471720 806 ntBASIC17.98■□□□□ 0.47
VMP1Q96GC9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 BX088651.1-201ENST00000540551 451 ntBASIC17.98■□□□□ 0.47
VMP1Q96GC9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 AC073912.3-201ENST00000624414 853 ntBASIC17.98■□□□□ 0.47
VMP1Q96GC9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VMP1Q96GC9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 AL390961.4-201ENST00000623958 2535 ntBASIC17.98■□□□□ 0.47
VMP1Q96GC9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VMP1Q96GC9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 RBM17P1-201ENST00000453646 1190 ntBASIC17.97■□□□□ 0.47
VMP1Q96GC9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 DGCR10-201ENST00000609839 495 ntBASIC17.97■□□□□ 0.47
VMP1Q96GC9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 LINC01465-201ENST00000408887 1940 ntBASIC17.97■□□□□ 0.47
VMP1Q96GC9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VMP1Q96GC9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 AC020763.4-201ENST00000623414 4170 ntBASIC17.97■□□□□ 0.47
VMP1Q96GC9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VMP1Q96GC9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 RCC2P6-201ENST00000526625 1557 ntBASIC17.96■□□□□ 0.47
VMP1Q96GC9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 AC004951.3-201ENST00000418645 1148 ntBASIC17.96■□□□□ 0.47
VMP1Q96GC9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms