Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC139887.4-201ENST00000607877 719 ntBASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 AL138966.2-201ENST00000621997 464 ntBASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 AC141257.4-201ENST00000634557 245 ntBASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 AC136944.6-201ENST00000634818 245 ntBASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP3Q96DZ5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 AC117947.1-201ENST00000427448 529 ntBASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 COX11P1-201ENST00000489116 835 ntBASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 WWOX-216ENST00000569818 525 ntBASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP3Q96DZ5 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.08■□□□□ 0.49
CLIP3Q96DZ5 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 AC005082.1-201ENST00000413042 2259 ntBASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 SDHAP1-207ENST00000440850 2000 ntBASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLIP3Q96DZ5 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 AC022616.7-201ENST00000525383 220 ntBASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLIP3Q96DZ5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms