Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PRKY-204ENST00000533551 1019 ntBASIC21.31■■□□□ 1
ERCC4Q92889 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.31■■□□□ 1
ERCC4Q92889 MTDHP1-201ENST00000605323 784 ntBASIC21.31■■□□□ 1
ERCC4Q92889 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.31■■□□□ 1
ERCC4Q92889 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
ERCC4Q92889 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC4Q92889 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC4Q92889 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.31■■□□□ 1
ERCC4Q92889 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.31■■□□□ 1
ERCC4Q92889 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC4Q92889 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.3■■□□□ 1
ERCC4Q92889 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.3■■□□□ 1
ERCC4Q92889 FZD10-202ENST00000539839 3282 ntBASIC21.3■■□□□ 1
ERCC4Q92889 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.3■■□□□ 1
ERCC4Q92889 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.3■■□□□ 1
ERCC4Q92889 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.3■■□□□ 1
ERCC4Q92889 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 AC069544.1-201ENST00000609399 999 ntBASIC21.3■■□□□ 1
ERCC4Q92889 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
ERCC4Q92889 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
ERCC4Q92889 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.3■■□□□ 1
ERCC4Q92889 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC4Q92889 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.29■■□□□ 1
ERCC4Q92889 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.29■■□□□ 1
ERCC4Q92889 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 PCDHB18P-201ENST00000524813 2368 ntBASIC21.29■■□□□ 1
ERCC4Q92889 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.29■■□□□ 1
ERCC4Q92889 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.29■■□□□ 1
ERCC4Q92889 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.29■■□□□ 1
ERCC4Q92889 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.29■■□□□ 1
ERCC4Q92889 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.29■■□□□ 1
ERCC4Q92889 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
ERCC4Q92889 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 AP003097.1-201ENST00000530657 1135 ntBASIC21.29■■□□□ 1
ERCC4Q92889 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.29■■□□□ 1
ERCC4Q92889 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.29■■□□□ 1
ERCC4Q92889 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.29■■□□□ 1
ERCC4Q92889 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.29■■□□□ 1
ERCC4Q92889 AL023875.1-201ENST00000640777 796 ntBASIC21.29■■□□□ 1
ERCC4Q92889 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.29■■□□□ 1
ERCC4Q92889 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.29■■□□□ 1
ERCC4Q92889 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.29■■□□□ 1
ERCC4Q92889 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.29■■□□□ 1
ERCC4Q92889 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
ERCC4Q92889 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.28■■□□□ 1
ERCC4Q92889 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.28■■□□□ 1
ERCC4Q92889 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
ERCC4Q92889 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.28■■□□□ 1
ERCC4Q92889 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
ERCC4Q92889 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
ERCC4Q92889 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.28■■□□□ 1
ERCC4Q92889 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.28■■□□□ 1
ERCC4Q92889 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
ERCC4Q92889 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.28■■□□□ 1
ERCC4Q92889 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.28■■□□□ 1
ERCC4Q92889 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.28■■□□□ 1
ERCC4Q92889 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC21.27■■□□□ 1
ERCC4Q92889 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
ERCC4Q92889 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ERCC4Q92889 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ERCC4Q92889 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ERCC4Q92889 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ERCC4Q92889 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
ERCC4Q92889 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms