Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.82■□□□□ 0.6
HMGB4Q8WW32 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 RNF126P1-202ENST00000569893 925 ntBASIC18.81■□□□□ 0.6
HMGB4Q8WW32 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 AL109659.2-201ENST00000606809 1674 ntBASIC18.81■□□□□ 0.6
HMGB4Q8WW32 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB4Q8WW32 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 PCDHAC2-203ENST00000615316 3011 ntBASIC18.8■□□□□ 0.6
HMGB4Q8WW32 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 LINC00265-3P-201ENST00000447588 903 ntBASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AP000867.3-201ENST00000524675 377 ntBASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AL512353.2-201ENST00000448759 1962 ntBASIC18.8■□□□□ 0.6
HMGB4Q8WW32 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB4Q8WW32 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.79■□□□□ 0.6
HMGB4Q8WW32 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms