Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 IRX1P1-201ENST00000438849 1838 ntBASIC18.3■□□□□ 0.52
LMX1AQ8TE12 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1AQ8TE12 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.29■□□□□ 0.52
LMX1AQ8TE12 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 AL450487.1-201ENST00000426799 995 ntBASIC18.29■□□□□ 0.52
LMX1AQ8TE12 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 BX276092.5-203ENST00000456199 560 ntBASIC18.29■□□□□ 0.52
LMX1AQ8TE12 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 AL136038.4-201ENST00000603606 1261 ntBASIC18.29■□□□□ 0.52
LMX1AQ8TE12 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 AL158211.5-201ENST00000623583 2518 ntBASIC18.29■□□□□ 0.52
LMX1AQ8TE12 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1AQ8TE12 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 AL121672.3-201ENST00000608644 468 ntBASIC18.28■□□□□ 0.52
LMX1AQ8TE12 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 AC012313.10-201ENST00000623509 926 ntBASIC18.28■□□□□ 0.52
LMX1AQ8TE12 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1AQ8TE12 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 TSSC2-201ENST00000450217 709 ntBASIC18.27■□□□□ 0.52
LMX1AQ8TE12 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 NPAP1P7-201ENST00000613027 823 ntBASIC18.27■□□□□ 0.52
LMX1AQ8TE12 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 AL391807.1-203ENST00000604392 2365 ntBASIC18.27■□□□□ 0.52
LMX1AQ8TE12 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1AQ8TE12 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LMX1AQ8TE12 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms