Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC25.98■■□□□ 1.75
MSH6P52701 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC25.98■■□□□ 1.75
MSH6P52701 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC25.98■■□□□ 1.75
MSH6P52701 AC024563.2-201ENST00000603282 481 ntBASIC25.98■■□□□ 1.75
MSH6P52701 AC027601.4-201ENST00000611259 610 ntBASIC25.98■■□□□ 1.75
MSH6P52701 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC25.98■■□□□ 1.75
MSH6P52701 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC25.98■■□□□ 1.75
MSH6P52701 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
MSH6P52701 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
MSH6P52701 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH6P52701 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
MSH6P52701 AL353692.3-201ENST00000407031 1396 ntBASIC25.98■■□□□ 1.75
MSH6P52701 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC25.98■■□□□ 1.75
MSH6P52701 SDHAP1-207ENST00000440850 2000 ntBASIC25.98■■□□□ 1.75
MSH6P52701 AL691432.2-201ENST00000607222 2038 ntBASIC25.98■■□□□ 1.75
MSH6P52701 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC25.97■■□□□ 1.75
MSH6P52701 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC25.97■■□□□ 1.75
MSH6P52701 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH6P52701 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC25.97■■□□□ 1.75
MSH6P52701 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH6P52701 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC25.97■■□□□ 1.75
MSH6P52701 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH6P52701 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC25.97■■□□□ 1.75
MSH6P52701 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
MSH6P52701 ME2-216ENST00000639850 2331 ntTSL 5 BASIC25.96■■□□□ 1.75
MSH6P52701 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH6P52701 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC25.96■■□□□ 1.75
MSH6P52701 MED15P5-201ENST00000423150 992 ntBASIC25.96■■□□□ 1.75
MSH6P52701 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 HNRNPDP1-201ENST00000439535 754 ntBASIC25.96■■□□□ 1.75
MSH6P52701 FAM197Y3-203ENST00000618346 717 ntBASIC25.96■■□□□ 1.75
MSH6P52701 AL355877.3-201ENST00000622820 899 ntBASIC25.96■■□□□ 1.75
MSH6P52701 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
MSH6P52701 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
MSH6P52701 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
MSH6P52701 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH6P52701 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
MSH6P52701 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH6P52701 ELP6-205ENST00000439305 880 ntTSL 2 BASIC25.95■■□□□ 1.75
MSH6P52701 AL356488.2-201ENST00000602755 427 ntBASIC25.95■■□□□ 1.75
MSH6P52701 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH6P52701 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
MSH6P52701 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.95■■□□□ 1.74
MSH6P52701 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH6P52701 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH6P52701 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH6P52701 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
MSH6P52701 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH6P52701 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
MSH6P52701 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH6P52701 FGFR3P6-201ENST00000457012 610 ntBASIC25.95■■□□□ 1.74
MSH6P52701 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
MSH6P52701 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC25.95■■□□□ 1.74
MSH6P52701 MIR3180-4-201ENST00000582223 153 ntBASIC25.95■■□□□ 1.74
MSH6P52701 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH6P52701 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC25.95■■□□□ 1.74
MSH6P52701 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC25.95■■□□□ 1.74
MSH6P52701 AC104109.2-201ENST00000602919 1418 ntBASIC25.94■■□□□ 1.74
MSH6P52701 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC25.94■■□□□ 1.74
MSH6P52701 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 ENSA-205ENST00000361532 792 ntTSL 2 BASIC25.94■■□□□ 1.74
MSH6P52701 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
MSH6P52701 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC25.94■■□□□ 1.74
MSH6P52701 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC25.94■■□□□ 1.74
MSH6P52701 IGHV3-22-201ENST00000520721 359 ntBASIC25.94■■□□□ 1.74
MSH6P52701 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC25.94■■□□□ 1.74
MSH6P52701 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 RCC2P3-201ENST00000418112 1537 ntBASIC25.93■■□□□ 1.74
MSH6P52701 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC25.93■■□□□ 1.74
MSH6P52701 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC25.93■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms