Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN4P29074 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.86■□□□□ 0.61
PTPN4P29074 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.86■□□□□ 0.61
PTPN4P29074 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.86■□□□□ 0.61
PTPN4P29074 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.86■□□□□ 0.61
PTPN4P29074 AC113410.3-201ENST00000623366 203 ntBASIC18.86■□□□□ 0.61
PTPN4P29074 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 AL512353.2-201ENST00000448759 1962 ntBASIC18.86■□□□□ 0.61
PTPN4P29074 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
PTPN4P29074 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN4P29074 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PTPN4P29074 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTPN4P29074 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
PTPN4P29074 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTPN4P29074 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PTPN4P29074 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.85■□□□□ 0.61
PTPN4P29074 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTPN4P29074 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTPN4P29074 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PTPN4P29074 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN4P29074 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTPN4P29074 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTPN4P29074 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.84■□□□□ 0.61
PTPN4P29074 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN4P29074 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.84■□□□□ 0.61
PTPN4P29074 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
PTPN4P29074 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN4P29074 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.84■□□□□ 0.61
PTPN4P29074 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN4P29074 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.84■□□□□ 0.61
PTPN4P29074 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.84■□□□□ 0.61
PTPN4P29074 LINC01023-201ENST00000606054 436 ntBASIC18.84■□□□□ 0.61
PTPN4P29074 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.84■□□□□ 0.61
PTPN4P29074 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN4P29074 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN4P29074 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTPN4P29074 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PTPN4P29074 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
PTPN4P29074 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTPN4P29074 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.83■□□□□ 0.61
PTPN4P29074 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.83■□□□□ 0.61
PTPN4P29074 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTPN4P29074 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.83■□□□□ 0.6
PTPN4P29074 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
PTPN4P29074 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.83■□□□□ 0.6
PTPN4P29074 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.83■□□□□ 0.6
PTPN4P29074 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN4P29074 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms