Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL1P09341 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL1P09341 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL1P09341 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL1P09341 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL1P09341 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL1P09341 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL1P09341 AC008406.3-201ENST00000620001 1374 ntBASIC14.59□□□□□ -0.07
CXCL1P09341 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.07
CXCL1P09341 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL1P09341 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL1P09341 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL1P09341 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL1P09341 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL1P09341 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 PEMT-206ENST00000435340 960 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL1P09341 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC14.58□□□□□ -0.08
CXCL1P09341 SUDS3P1-201ENST00000505831 966 ntBASIC14.58□□□□□ -0.08
CXCL1P09341 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.58□□□□□ -0.08
CXCL1P09341 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC14.58□□□□□ -0.08
CXCL1P09341 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CXCL1P09341 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL1P09341 PP12613-201ENST00000424958 2230 ntBASIC14.58□□□□□ -0.08
CXCL1P09341 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL1P09341 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 KRT8P17-201ENST00000453110 1448 ntBASIC14.58□□□□□ -0.08
CXCL1P09341 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL1P09341 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC14.57□□□□□ -0.08
CXCL1P09341 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL1P09341 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL1P09341 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 AL031963.3-201ENST00000606441 850 ntBASIC14.57□□□□□ -0.08
CXCL1P09341 AC110285.6-201ENST00000617652 491 ntBASIC14.57□□□□□ -0.08
CXCL1P09341 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL1P09341 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL1P09341 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
CXCL1P09341 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
CXCL1P09341 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CXCL1P09341 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL1P09341 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL1P09341 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL1P09341 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CXCL1P09341 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CXCL1P09341 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
CXCL1P09341 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL1P09341 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CXCL1P09341 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL1P09341 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CXCL1P09341 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms