Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
COL4A2P08572 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A2P08572 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A2P08572 AC068587.9-201ENST00000641814 219 ntBASIC18.93■□□□□ 0.62
COL4A2P08572 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL4A2P08572 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A2P08572 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.93■□□□□ 0.62
COL4A2P08572 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A2P08572 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A2P08572 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A2P08572 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.93■□□□□ 0.62
COL4A2P08572 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
COL4A2P08572 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL4A2P08572 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL4A2P08572 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A2P08572 RN7SL606P-201ENST00000472779 293 ntBASIC18.92■□□□□ 0.62
COL4A2P08572 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 AC124864.1-201ENST00000623408 392 ntBASIC18.92■□□□□ 0.62
COL4A2P08572 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A2P08572 AL157384.1-201ENST00000445995 2473 ntBASIC18.92■□□□□ 0.62
COL4A2P08572 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A2P08572 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A2P08572 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A2P08572 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A2P08572 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL4A2P08572 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.91■□□□□ 0.62
COL4A2P08572 AC006538.3-201ENST00000612495 578 ntBASIC18.91■□□□□ 0.62
COL4A2P08572 BX640515.1-201ENST00000617215 977 ntBASIC18.91■□□□□ 0.62
COL4A2P08572 AL773604.1-201ENST00000617417 272 ntBASIC18.91■□□□□ 0.62
COL4A2P08572 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.91■□□□□ 0.62
COL4A2P08572 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.91■□□□□ 0.62
COL4A2P08572 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A2P08572 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
COL4A2P08572 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A2P08572 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 AP001005.1-201ENST00000571755 1248 ntBASIC18.91■□□□□ 0.62
COL4A2P08572 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.91■□□□□ 0.62
COL4A2P08572 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A2P08572 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL4A2P08572 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A2P08572 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 LINC01006-201ENST00000333319 2292 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 KRT8P50-201ENST00000562022 1438 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 MIR564-202ENST00000385049 94 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 VENTXP7-201ENST00000475503 772 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 SLC25A1P1-201ENST00000528351 927 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.9■□□□□ 0.62
COL4A2P08572 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 IL9RP2-201ENST00000423948 1312 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 Z98044.1-201ENST00000632503 1764 ntBASIC18.9■□□□□ 0.62
COL4A2P08572 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A2P08572 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A2P08572 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.89■□□□□ 0.62
COL4A2P08572 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL4A2P08572 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms