Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC23■■□□□ 1.27
COL4A1P02462 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC23■■□□□ 1.27
COL4A1P02462 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL4A1P02462 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A1P02462 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A1P02462 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
COL4A1P02462 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL4A1P02462 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A1P02462 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23■■□□□ 1.27
COL4A1P02462 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 LINC00265-3P-201ENST00000447588 903 ntBASIC23■■□□□ 1.27
COL4A1P02462 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC23■■□□□ 1.27
COL4A1P02462 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A1P02462 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC22.99■■□□□ 1.27
COL4A1P02462 LINC00167-201ENST00000530583 1419 ntBASIC22.99■■□□□ 1.27
COL4A1P02462 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.99■■□□□ 1.27
COL4A1P02462 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
COL4A1P02462 KRT18P1-202ENST00000452408 1331 ntBASIC22.99■■□□□ 1.27
COL4A1P02462 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 PBK-203ENST00000522944 1499 ntTSL 2 BASIC22.99■■□□□ 1.27
COL4A1P02462 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC22.99■■□□□ 1.27
COL4A1P02462 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
COL4A1P02462 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC22.99■■□□□ 1.27
COL4A1P02462 NAA38-203ENST00000575071 553 ntTSL 2 BASIC22.99■■□□□ 1.27
COL4A1P02462 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC22.99■■□□□ 1.27
COL4A1P02462 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
COL4A1P02462 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC22.99■■□□□ 1.27
COL4A1P02462 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.99■■□□□ 1.27
COL4A1P02462 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL4A1P02462 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
COL4A1P02462 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL4A1P02462 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL4A1P02462 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL4A1P02462 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL4A1P02462 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL4A1P02462 MIR564-202ENST00000385049 94 ntBASIC22.98■■□□□ 1.27
COL4A1P02462 TSPY19P-201ENST00000418461 509 ntBASIC22.98■■□□□ 1.27
COL4A1P02462 TSPY18P-201ENST00000441642 509 ntBASIC22.98■■□□□ 1.27
COL4A1P02462 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC22.98■■□□□ 1.27
COL4A1P02462 AC012615.1-201ENST00000565797 1299 ntBASIC22.98■■□□□ 1.27
COL4A1P02462 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
COL4A1P02462 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC22.98■■□□□ 1.27
COL4A1P02462 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC22.98■■□□□ 1.27
COL4A1P02462 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
COL4A1P02462 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.98■■□□□ 1.27
COL4A1P02462 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL4A1P02462 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL4A1P02462 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC22.97■■□□□ 1.27
COL4A1P02462 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC22.97■■□□□ 1.27
COL4A1P02462 BET1L-206ENST00000486280 665 ntTSL 3 BASIC22.97■■□□□ 1.27
COL4A1P02462 PNN-202ENST00000553331 656 ntTSL 3 BASIC22.97■■□□□ 1.27
COL4A1P02462 AC104692.2-201ENST00000603054 253 ntBASIC22.97■■□□□ 1.27
COL4A1P02462 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL4A1P02462 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL4A1P02462 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.97■■□□□ 1.27
COL4A1P02462 AL049812.1-201ENST00000432563 2267 ntBASIC22.97■■□□□ 1.27
COL4A1P02462 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL4A1P02462 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL4A1P02462 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 KRT8P50-201ENST00000562022 1438 ntBASIC22.97■■□□□ 1.27
COL4A1P02462 AKR1C7P-201ENST00000305623 895 ntBASIC22.97■■□□□ 1.27
COL4A1P02462 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
COL4A1P02462 KLK8-205ENST00000593490 267 ntTSL 3 BASIC22.97■■□□□ 1.27
COL4A1P02462 GPR32P1-201ENST00000601788 811 ntBASIC22.97■■□□□ 1.27
COL4A1P02462 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
COL4A1P02462 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC22.97■■□□□ 1.27
COL4A1P02462 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC22.97■■□□□ 1.27
COL4A1P02462 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.96■■□□□ 1.27
COL4A1P02462 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 Z98044.1-201ENST00000632503 1764 ntBASIC22.96■■□□□ 1.27
COL4A1P02462 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
COL4A1P02462 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
COL4A1P02462 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC22.96■■□□□ 1.27
COL4A1P02462 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.96■■□□□ 1.27
COL4A1P02462 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.96■■□□□ 1.27
COL4A1P02462 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL4A1P02462 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms