Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.36■□□□□ 0.53
TNFP01375 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.36■□□□□ 0.53
TNFP01375 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TNFP01375 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.36■□□□□ 0.53
TNFP01375 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.36■□□□□ 0.53
TNFP01375 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.36■□□□□ 0.53
TNFP01375 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TNFP01375 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.35■□□□□ 0.53
TNFP01375 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TNFP01375 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.35■□□□□ 0.53
TNFP01375 AC092597.1-201ENST00000487352 616 ntBASIC18.35■□□□□ 0.53
TNFP01375 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.35■□□□□ 0.53
TNFP01375 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.35■□□□□ 0.53
TNFP01375 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.35■□□□□ 0.53
TNFP01375 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TNFP01375 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.34■□□□□ 0.53
TNFP01375 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 AC093484.2-201ENST00000580996 2166 ntBASIC18.34■□□□□ 0.53
TNFP01375 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.34■□□□□ 0.53
TNFP01375 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.34■□□□□ 0.53
TNFP01375 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
TNFP01375 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.34■□□□□ 0.53
TNFP01375 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.34■□□□□ 0.53
TNFP01375 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.34■□□□□ 0.53
TNFP01375 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
TNFP01375 AC093458.2-201ENST00000623150 629 ntBASIC18.34■□□□□ 0.53
TNFP01375 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.34■□□□□ 0.53
TNFP01375 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
TNFP01375 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.34■□□□□ 0.53
TNFP01375 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.34■□□□□ 0.53
TNFP01375 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TNFP01375 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.34■□□□□ 0.53
TNFP01375 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.33■□□□□ 0.53
TNFP01375 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.33■□□□□ 0.53
TNFP01375 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
TNFP01375 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TNFP01375 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TNFP01375 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.33■□□□□ 0.53
TNFP01375 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.33■□□□□ 0.52
TNFP01375 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.33■□□□□ 0.52
TNFP01375 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
TNFP01375 MIR3917-201ENST00000580971 93 ntBASIC18.33■□□□□ 0.52
TNFP01375 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.33■□□□□ 0.52
TNFP01375 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.33■□□□□ 0.52
TNFP01375 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.33■□□□□ 0.52
TNFP01375 AL157888.1-201ENST00000631930 593 ntBASIC18.33■□□□□ 0.52
TNFP01375 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
TNFP01375 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TNFP01375 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
TNFP01375 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TNFP01375 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TNFP01375 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.32■□□□□ 0.52
TNFP01375 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms