Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.65■■□□□ 1.38
CACNA1FO60840 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
CACNA1FO60840 GUK1-204ENST00000366721 689 ntTSL 3 BASIC23.65■■□□□ 1.38
CACNA1FO60840 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC23.65■■□□□ 1.38
CACNA1FO60840 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
CACNA1FO60840 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CACNA1FO60840 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC23.65■■□□□ 1.38
CACNA1FO60840 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CACNA1FO60840 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CACNA1FO60840 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.65■■□□□ 1.38
CACNA1FO60840 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC23.64■■□□□ 1.38
CACNA1FO60840 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CACNA1FO60840 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CACNA1FO60840 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CACNA1FO60840 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC23.64■■□□□ 1.38
CACNA1FO60840 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
CACNA1FO60840 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
CACNA1FO60840 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CACNA1FO60840 AL671277.2-201ENST00000458060 996 ntBASIC23.64■■□□□ 1.38
CACNA1FO60840 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC23.64■■□□□ 1.38
CACNA1FO60840 MIR3180-4-201ENST00000582223 153 ntBASIC23.64■■□□□ 1.38
CACNA1FO60840 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.64■■□□□ 1.37
CACNA1FO60840 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.64■■□□□ 1.37
CACNA1FO60840 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.64■■□□□ 1.37
CACNA1FO60840 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
CACNA1FO60840 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CACNA1FO60840 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1FO60840 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
CACNA1FO60840 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC23.63■■□□□ 1.37
CACNA1FO60840 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
CACNA1FO60840 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
CACNA1FO60840 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1FO60840 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
CACNA1FO60840 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1FO60840 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1FO60840 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1FO60840 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CACNA1FO60840 AC092647.4-201ENST00000457211 535 ntBASIC23.63■■□□□ 1.37
CACNA1FO60840 RNF146-204ENST00000476956 884 ntTSL 2 BASIC23.63■■□□□ 1.37
CACNA1FO60840 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC23.63■■□□□ 1.37
CACNA1FO60840 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
CACNA1FO60840 KRT89P-201ENST00000620027 1478 ntBASIC23.63■■□□□ 1.37
CACNA1FO60840 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC23.63■■□□□ 1.37
CACNA1FO60840 AL391807.1-203ENST00000604392 2365 ntBASIC23.63■■□□□ 1.37
CACNA1FO60840 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.62■■□□□ 1.37
CACNA1FO60840 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
CACNA1FO60840 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CACNA1FO60840 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CACNA1FO60840 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC23.62■■□□□ 1.37
CACNA1FO60840 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CACNA1FO60840 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
CACNA1FO60840 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CACNA1FO60840 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC23.62■■□□□ 1.37
CACNA1FO60840 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CACNA1FO60840 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1FO60840 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC23.61■■□□□ 1.37
CACNA1FO60840 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.61■■□□□ 1.37
CACNA1FO60840 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC23.61■■□□□ 1.37
CACNA1FO60840 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC23.61■■□□□ 1.37
CACNA1FO60840 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC23.61■■□□□ 1.37
CACNA1FO60840 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1FO60840 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.61■■□□□ 1.37
CACNA1FO60840 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC23.61■■□□□ 1.37
CACNA1FO60840 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC23.61■■□□□ 1.37
CACNA1FO60840 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1FO60840 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1FO60840 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1FO60840 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.61■■□□□ 1.37
CACNA1FO60840 AC024243.1-201ENST00000609234 778 ntBASIC23.61■■□□□ 1.37
CACNA1FO60840 AL121956.5-201ENST00000625261 221 ntBASIC23.61■■□□□ 1.37
CACNA1FO60840 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC23.61■■□□□ 1.37
CACNA1FO60840 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC23.61■■□□□ 1.37
CACNA1FO60840 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1FO60840 AL499627.1-201ENST00000569373 2188 ntBASIC23.6■■□□□ 1.37
CACNA1FO60840 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC23.6■■□□□ 1.37
CACNA1FO60840 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC23.6■■□□□ 1.37
CACNA1FO60840 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC23.6■■□□□ 1.37
CACNA1FO60840 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.6■■□□□ 1.37
CACNA1FO60840 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1FO60840 DFFB-212ENST00000625756 649 ntTSL 5 BASIC23.6■■□□□ 1.37
CACNA1FO60840 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.59■■□□□ 1.37
CACNA1FO60840 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CACNA1FO60840 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CACNA1FO60840 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms