Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SGCEO43556 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SGCEO43556 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SGCEO43556 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SGCEO43556 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.61■□□□□ 0.25
SGCEO43556 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SGCEO43556 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SGCEO43556 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.61■□□□□ 0.25
SGCEO43556 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 FSCN1P1-201ENST00000568912 1481 ntBASIC16.61■□□□□ 0.25
SGCEO43556 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SGCEO43556 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.61■□□□□ 0.25
SGCEO43556 AC093503.3-201ENST00000624917 2352 ntBASIC16.6■□□□□ 0.25
SGCEO43556 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
SGCEO43556 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
SGCEO43556 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.6■□□□□ 0.25
SGCEO43556 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.6■□□□□ 0.25
SGCEO43556 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.6■□□□□ 0.25
SGCEO43556 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 FAM207BP-201ENST00000447172 505 ntBASIC16.6■□□□□ 0.25
SGCEO43556 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 AC233702.5-201ENST00000584107 538 ntBASIC16.6■□□□□ 0.25
SGCEO43556 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SGCEO43556 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SGCEO43556 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SGCEO43556 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SGCEO43556 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.59■□□□□ 0.25
SGCEO43556 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.59■□□□□ 0.25
SGCEO43556 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SGCEO43556 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.59■□□□□ 0.25
SGCEO43556 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.59■□□□□ 0.25
SGCEO43556 B3GAT3P1-201ENST00000471720 806 ntBASIC16.59■□□□□ 0.25
SGCEO43556 AC011506.1-201ENST00000474329 610 ntBASIC16.59■□□□□ 0.25
SGCEO43556 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.59■□□□□ 0.25
SGCEO43556 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.59■□□□□ 0.25
SGCEO43556 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.59■□□□□ 0.25
SGCEO43556 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.59■□□□□ 0.25
SGCEO43556 AC130371.2-201ENST00000619443 611 ntBASIC16.59■□□□□ 0.25
SGCEO43556 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.59■□□□□ 0.25
SGCEO43556 AL049637.2-201ENST00000641778 930 ntBASIC16.59■□□□□ 0.25
SGCEO43556 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.59■□□□□ 0.25
SGCEO43556 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.59■□□□□ 0.25
SGCEO43556 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms