Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN3O15551 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.52■□□□□ 0.88
CLDN3O15551 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CLDN3O15551 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN3O15551 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN3O15551 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN3O15551 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN3O15551 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN3O15551 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.52■□□□□ 0.88
CLDN3O15551 CR769767.2-201ENST00000622735 460 ntBASIC20.52■□□□□ 0.88
CLDN3O15551 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.52■□□□□ 0.88
CLDN3O15551 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN3O15551 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
CLDN3O15551 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN3O15551 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN3O15551 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN3O15551 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN3O15551 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
CLDN3O15551 AC004408.2-201ENST00000623613 2777 ntBASIC20.51■□□□□ 0.87
CLDN3O15551 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
CLDN3O15551 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLDN3O15551 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
CLDN3O15551 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.51■□□□□ 0.87
CLDN3O15551 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.51■□□□□ 0.87
CLDN3O15551 WWOX-216ENST00000569818 525 ntBASIC20.51■□□□□ 0.87
CLDN3O15551 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.51■□□□□ 0.87
CLDN3O15551 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.51■□□□□ 0.87
CLDN3O15551 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLDN3O15551 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.51■□□□□ 0.87
CLDN3O15551 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CLDN3O15551 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN3O15551 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.51■□□□□ 0.87
CLDN3O15551 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN3O15551 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.5■□□□□ 0.87
CLDN3O15551 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.5■□□□□ 0.87
CLDN3O15551 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.5■□□□□ 0.87
CLDN3O15551 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CLDN3O15551 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.5■□□□□ 0.87
CLDN3O15551 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CLDN3O15551 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 MIR3180-5-201ENST00000583743 153 ntBASIC20.5■□□□□ 0.87
CLDN3O15551 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CLDN3O15551 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN3O15551 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN3O15551 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CLDN3O15551 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN3O15551 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN3O15551 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN3O15551 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.5■□□□□ 0.87
CLDN3O15551 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 AC008556.1-201ENST00000610908 2040 ntBASIC20.49■□□□□ 0.87
CLDN3O15551 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN3O15551 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN3O15551 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN3O15551 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN3O15551 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.49■□□□□ 0.87
CLDN3O15551 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN3O15551 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 AC036111.1-201ENST00000533973 1582 ntBASIC20.49■□□□□ 0.87
CLDN3O15551 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN3O15551 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.49■□□□□ 0.87
CLDN3O15551 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.49■□□□□ 0.87
CLDN3O15551 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CLDN3O15551 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN3O15551 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
CLDN3O15551 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.49■□□□□ 0.87
CLDN3O15551 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms