Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
MSH4O15457 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH4O15457 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH4O15457 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH4O15457 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH4O15457 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH4O15457 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.1■□□□□ 0.97
MSH4O15457 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH4O15457 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
MSH4O15457 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH4O15457 TSPY5P-201ENST00000426936 936 ntBASIC21.1■□□□□ 0.97
MSH4O15457 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
MSH4O15457 AL031432.5-201ENST00000641059 760 ntBASIC21.1■□□□□ 0.97
MSH4O15457 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH4O15457 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
MSH4O15457 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH4O15457 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH4O15457 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH4O15457 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
MSH4O15457 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
MSH4O15457 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 AP000523.1-201ENST00000398242 1049 ntBASIC21.09■□□□□ 0.97
MSH4O15457 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
MSH4O15457 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.09■□□□□ 0.97
MSH4O15457 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.09■□□□□ 0.97
MSH4O15457 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.09■□□□□ 0.97
MSH4O15457 AC063952.2-201ENST00000498792 1227 ntBASIC21.09■□□□□ 0.97
MSH4O15457 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.09■□□□□ 0.97
MSH4O15457 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH4O15457 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH4O15457 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH4O15457 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.09■□□□□ 0.97
MSH4O15457 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH4O15457 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH4O15457 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH4O15457 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
MSH4O15457 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH4O15457 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.08■□□□□ 0.97
MSH4O15457 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.08■□□□□ 0.97
MSH4O15457 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.08■□□□□ 0.97
MSH4O15457 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH4O15457 AC024243.1-201ENST00000609234 778 ntBASIC21.08■□□□□ 0.97
MSH4O15457 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH4O15457 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH4O15457 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH4O15457 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH4O15457 AP000974.1-201ENST00000623909 2387 ntBASIC21.08■□□□□ 0.96
MSH4O15457 Z98044.1-201ENST00000632503 1764 ntBASIC21.08■□□□□ 0.96
MSH4O15457 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MSH4O15457 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
MSH4O15457 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
MSH4O15457 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.07■□□□□ 0.96
MSH4O15457 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH4O15457 AC022616.7-201ENST00000525383 220 ntBASIC21.07■□□□□ 0.96
MSH4O15457 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH4O15457 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.07■□□□□ 0.96
MSH4O15457 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH4O15457 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH4O15457 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH4O15457 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
MSH4O15457 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH4O15457 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH4O15457 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
MSH4O15457 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH4O15457 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH4O15457 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.06■□□□□ 0.96
MSH4O15457 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH4O15457 SEC1P-202ENST00000473944 940 ntBASIC21.06■□□□□ 0.96
MSH4O15457 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms