Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC026310.3-201ENST00000625186 2373 ntBASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC116407.3-201ENST00000623905 1129 ntBASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC104417.2-201ENST00000562989 1793 ntBASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 AP006288.1-201ENST00000446065 395 ntBASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 GUSBP12-201ENST00000513727 720 ntBASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 RFPL4AP1-201ENST00000530883 850 ntBASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 AC244107.1-201ENST00000442033 332 ntBASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 MCCD1P1-208ENST00000445732 328 ntBASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 FAM215A-202ENST00000632077 792 ntBASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A6A6NMZ7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
COL6A6A6NMZ7 HOXB1-202ENST00000577092 1414 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 AC002347.1-201ENST00000569543 541 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 HLA-J-203ENST00000494367 1087 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 RNA5SP415-201ENST00000517246 115 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 SART3-203ENST00000546611 1184 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 AC011840.4-201ENST00000578471 627 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 AC092364.2-202ENST00000597012 1073 ntBASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A6A6NMZ7 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 AP003733.1-201ENST00000491725 852 ntBASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.88■□□□□ 0.29
COL6A6A6NMZ7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 MINOS1P3-201ENST00000457048 203 ntBASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms